Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_07610	PS417_07615	PS417_07620	PS417_07625	PS417_07630
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.6	-3.4	-0.2	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.7	-3.5	-0.0	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-2.6	-1.8	+0.0	-0.0
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-4.0	-0.0	-0.1	-0.1
soil	soil sample 6; outgrowth in LB	N.D.	-0.2	-4.1	-0.1	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.9	-3.2	+0.1	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.9	-3.5	+0.2	+0.1
seeds	Growth on radish seeds for 72 hours	N.D.	-0.8	-2.9	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.1	-1.7	+0.1	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-3.5	-0.1	-0.2	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-1.7	-2.2	-0.0	+0.2
stress	Polymyxin B sulfate 0.006 mg/ml	N.D.	+0.1	-3.7	-0.1	+0.0
stress	Gentamicin 0.008 mg/ml	N.D.	-0.3	-2.8	-0.4	+0.0
motility	outer cut, LB soft agar motility assay	N.D.	-0.6	-2.7	-0.2	-0.0
motility	outer cut, LB soft agar motility assay	N.D.	-0.5	-3.6	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	-2.8	-0.1	+0.3
carbon source	2-Deoxy-D-Ribose (C)	N.D.	-2.9	-0.9	+0.0	+0.3
soil	soil sample 2; outgrowth in LB	N.D.	+0.1	-3.3	-0.3	+0.1
stress	Phosphomycin 0.003 mg/ml	N.D.	-0.0	-3.3	-0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.1	-2.9	-0.2	+0.4
solid stress	Fraxetin 3 mM; solid stress	N.D.	-2.7	+0.9	-0.3	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+1.1	-3.1	-0.2	+0.2
root	root sample 6; outgrowth in LB	N.D.	+0.9	-2.3	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+2.2	-1.3	+0.0	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+2.1	-1.3	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+2.8	-0.8	-0.0	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+2.5	-1.3	+0.2	+0.7
stress	R2A with Fusaric 120 ug/mL	N.D.	+1.7	+1.2	-0.4	-0.4
stress	R2A with Fusaric 120 ug/mL	N.D.	+1.9	+1.4	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+4.0	-0.9	+0.1	-0.3