Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07540 and PS417_07545 are separated by 267 nucleotidesPS417_07545 and PS417_07550 are separated by 91 nucleotidesPS417_07550 and PS417_07555 are separated by 213 nucleotidesPS417_07555 and PS417_07560 are separated by 81 nucleotides PS417_07540: PS417_07540 - multifunctional fatty acid oxidation complex subunit alpha, at 1,658,464 to 1,658,637 _07540 PS417_07545: PS417_07545 - ABC transporter ATP-binding protein, at 1,658,905 to 1,660,680 _07545 PS417_07550: PS417_07550 - lytic transglycosylase, at 1,660,772 to 1,662,700 _07550 PS417_07555: PS417_07555 - ABC transporter ATPase, at 1,662,914 to 1,664,833 _07555 PS417_07560: PS417_07560 - universal stress protein UspA, at 1,664,915 to 1,665,355 _07560
Group Condition PS417_07540 PS417_07545 PS417_07550 PS417_07555 PS417_07560
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 +0.0 -0.6 -0.2 -4.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.2 -0.6 -0.2 -3.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 -0.3 -0.7 -0.3 -1.3
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.0 -0.0 -0.4 -0.4 -3.2
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.0 -0.0 +0.0 -0.1 -4.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.2 -0.1 -0.5 -2.9
soil soil sample 4; outgrowth in LB -0.8 -0.2 +0.0 +0.1 -2.7
soil soil sample 7; outgrowth in LB -0.4 +0.0 +0.1 -0.2 -3.0
soil soil sample 5; outgrowth in LB +0.1 -0.5 +0.0 -0.4 -2.7
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 +0.0 -0.2 -0.2 -2.5
soil soil sample 2; outgrowth in LB -0.0 -0.1 -0.0 -0.1 -2.9
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 +0.2 -0.1 -0.2 -0.2 -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.2 -0.8 +0.1 -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +0.4 -0.3 -0.5 -3.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.0 -0.2 -0.3 -2.9
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.2 -0.2 +0.6 -0.0 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.2 -0.2 -0.2 -2.5
soil soil sample 6; outgrowth in LB +0.1 +0.1 +0.1 -0.0 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 +0.1 -0.0 -2.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.2 +0.6 -0.8 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 +0.3 -0.0 -0.0 -2.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.1 -0.0 -0.4 -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.1 +0.1 -0.4 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.6 -0.6 -0.5 -0.8
solid stress Fraxetin 3 mM; solid stress -0.2 +0.6 -1.3 -0.2 +1.1
solid stress Fraxetin 3 mM; solid stress +0.0 +1.0 -1.3 -0.4 +0.7
solid stress Fraxetin 3 mM; solid stress -0.2 +1.1 -1.6 +0.1 +1.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.7 +0.2 -0.2 -0.0 +2.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 +0.8 -0.2 -0.0 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -0.3 +0.4 +0.2 +5.3
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