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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF1481 and GFF1482 are separated by 16 nucleotides
GFF1482 and GFF1483 are separated by 87 nucleotides
GFF1483 and GFF1484 are separated by 40 nucleotides
GFF1484 and GFF1485 are separated by 136 nucleotides
GFF1481 - RNA pseudouridylate synthase, at 1,506,863 to 1,507,543
GFF1481
GFF1482 - Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29), at 1,507,560 to 1,507,985
GFF1482
GFF1483 - hypothetical protein, at 1,508,073 to 1,509,290
GFF1483
GFF1484 - Free methionine-(R)-sulfoxide reductase, contains GAF domain, at 1,509,331 to 1,509,816
GFF1484
GFF1485 - hypothetical protein, at 1,509,953 to 1,510,807
GFF1485
Group
Condition
GFF1481
GFF1482
GFF1483
GFF1484
GFF1485
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
-0.5
-0.1
+0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.3
+0.0
+0.2
-0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.1
+0.0
-0.2
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
+0.1
-0.3
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.1
+0.0
-0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.2
-0.1
-0.3
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.2
+0.0
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.1
-0.0
-0.3
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.1
+0.0
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.2
+0.0
+0.0
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.1
+0.1
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
-0.1
+0.0
-0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.0
+0.1
-0.4
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.0
-0.1
+0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
-0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.0
+0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.1
+0.2
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.0
+0.1
+0.1
+0.0
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