Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07525	PS417_07530	PS417_07535	PS417_07540	PS417_07545
stress	Cisplatin 0.01 mg/ml	N.D.	-1.9	N.D.	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.0	N.D.	-1.5	-0.3
phage	P. simiae ORA MOI 1	N.D.	-0.1	N.D.	-0.8	-0.4
motility	inner cut, LB soft agar motility assay	N.D.	-0.3	N.D.	-0.9	-0.1
motility	inner cut, LB soft agar motility assay	N.D.	-0.2	N.D.	-0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.3	N.D.	-1.2	-0.2
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	N.D.	+0.1	N.D.	-0.9	-0.2
phage	JP1 MOI 10	N.D.	-0.4	N.D.	-0.7	+0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	N.D.	+0.4	N.D.	-1.0	-0.0
soil	soil sample 4; outgrowth in LB	N.D.	+0.5	N.D.	-0.8	-0.2
phage	Wcs_1	N.D.	-0.5	N.D.	+0.4	-0.3
stress	Neomycin 0.04 mg/ml	N.D.	-0.0	N.D.	-0.8	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.4	N.D.	-0.7	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+0.8	N.D.	-0.5	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	N.D.	+0.7	-0.1
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-0.2	N.D.	-0.3	+0.7
stress	methylglyoxal 0.032 vol%	N.D.	-0.3	N.D.	+1.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	N.D.	+0.6	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	N.D.	+0.8	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	N.D.	+0.9	+0.0
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.3	N.D.	-0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.6	N.D.	+0.5	+0.1
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.1	N.D.	+0.2	+1.1
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.4	N.D.	+0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	N.D.	+0.7	+0.4
root	root sample 6; outgrowth in LB	N.D.	+0.7	N.D.	+0.7	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.2	N.D.	+1.3	+0.2
liquid stress	Fraxetin 2 mM; liquid stress	N.D.	+0.3	N.D.	+1.2	+0.4
solid stress	Fraxetin 2 mM; solid stress	N.D.	+0.1	N.D.	+0.4	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	N.D.	+1.6	+0.8