Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07520 and PS417_07525 are separated by 134 nucleotidesPS417_07525 and PS417_07530 are separated by 13 nucleotidesPS417_07530 and PS417_07535 are separated by 140 nucleotidesPS417_07535 and PS417_07540 are separated by 53 nucleotides PS417_07520: PS417_07520 - 23S rRNA methyltransferase, at 1,654,257 to 1,655,333 _07520 PS417_07525: PS417_07525 - sulfurtransferase, at 1,655,468 to 1,655,719 _07525 PS417_07530: PS417_07530 - multidrug transporter, at 1,655,733 to 1,657,127 _07530 PS417_07535: PS417_07535 - erythronate-4-phosphate dehydrogenase, at 1,657,268 to 1,658,410 _07535 PS417_07540: PS417_07540 - multifunctional fatty acid oxidation complex subunit alpha, at 1,658,464 to 1,658,637 _07540
Group Condition PS417_07520 PS417_07525 PS417_07530 PS417_07535 PS417_07540
stress Cisplatin 0.01 mg/ml N.D. N.D. -1.9 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.0 N.D. -1.5
motility inner cut, LB soft agar motility assay N.D. N.D. -0.3 N.D. -0.9
motility inner cut, LB soft agar motility assay N.D. N.D. -0.2 N.D. -0.9
phage JP1 MOI 10 N.D. N.D. -0.4 N.D. -0.7
phage P. simiae ORA MOI 1 N.D. N.D. -0.1 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.3 N.D. -1.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. +0.1 N.D. -0.9
stress Phosphomycin 0.002 mg/ml N.D. N.D. +0.1 N.D. -0.9
solid stress 80% Methanol 2 mM; solid stress N.D. N.D. +0.1 N.D. -0.9
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x N.D. N.D. +0.4 N.D. -1.0
carbon source octanoate (C) N.D. N.D. +0.2 N.D. -0.8
soil soil sample 4; outgrowth in LB N.D. N.D. +0.5 N.D. -0.8
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. +0.4 N.D. -0.7
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. +0.3 N.D. -0.6
seeds Growth on radish seeds for 72 hours N.D. N.D. -0.5 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.4 N.D. +0.7
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. +0.8 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 N.D. +0.8
stress methylglyoxal 0.032 vol% N.D. N.D. -0.3 N.D. +1.3
phage P. simiae ORA MOI 0.1 N.D. N.D. +0.2 N.D. +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.3 N.D. +0.7
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. +0.4 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.6 N.D. +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.3 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.4 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.2 N.D. +1.6
root root sample 6; outgrowth in LB N.D. N.D. +0.7 N.D. +0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.2 N.D. +1.3
liquid stress Fraxetin 2 mM; liquid stress N.D. N.D. +0.3 N.D. +1.2
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