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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_07495 and PS417_07500 are separated by 99 nucleotides
PS417_07500 and PS417_07505 are separated by 126 nucleotides
PS417_07505 and PS417_07510 are separated by 109 nucleotides
PS417_07510 and PS417_07515 are separated by 188 nucleotides
PS417_07495: PS417_07495 - ATPase AAA, at 1,646,965 to 1,647,810
_07495
PS417_07500: PS417_07500 - hypothetical protein, at 1,647,910 to 1,648,986
_07500
PS417_07505: PS417_07505 - cysteine synthase, at 1,649,113 to 1,650,087
_07505
PS417_07510: PS417_07510 - aspartyl beta-hydroxylase, at 1,650,197 to 1,651,135
_07510
PS417_07515: PS417_07515 - aconitate hydratase, at 1,651,324 to 1,654,065
_07515
Group
Condition
PS417
_07495
PS417
_07500
PS417
_07505
PS417
_07510
PS417
_07515
solid stress
Fraxetin 3 mM; solid stress
+0.6
-0.0
+0.3
-2.2
-3.7
carbon source
octanoate (C)
+0.1
+0.0
-0.1
-3.9
-0.0
carbon source
octanoate (C)
-0.1
+0.1
-0.3
-3.8
+0.1
solid stress
Fraxetin 3 mM; solid stress
+0.8
-0.2
+0.3
-1.8
-2.3
solid stress
Fraxetin 3 mM; solid stress
+0.3
-0.2
+0.1
-2.2
-0.6
stress
Doxycycline hyclate 0.001 mg/ml
+0.2
-0.1
-0.0
-2.5
+0.0
stress
Tetracycline 0.001 mg/ml
+0.2
+0.0
-0.3
-2.1
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.2
-0.0
-0.4
-1.4
+0.2
solid stress
Fraxetin 3 mM; solid stress
+0.4
-0.0
-0.2
-1.1
-0.7
stress
Nalidixic 0.025 mg/ml
+0.1
-0.0
+0.2
-2.0
+0.1
stress
Nalidixic 0.015 mg/ml
+0.3
+0.0
-0.1
-1.7
-0.0
phage
P. simiae ORA MOI 0.1
+0.2
-0.3
-0.5
-1.0
+0.1
solid stress
Fraxetin 2 mM; solid stress
+0.0
+0.1
+0.2
-1.1
-0.5
carbon source
L-Valine (C)
-1.2
+0.2
-0.3
+0.1
-0.0
stress
methylglyoxal 0.032 vol%
+0.6
+0.1
-0.3
-1.4
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.7
+0.1
+0.4
-1.0
+0.2
solid stress
Fraxetin 2 mM; solid stress
+0.5
-0.2
+0.0
-0.6
-0.6
solid stress
80% Methanol 0.5 mM; solid stress
+0.3
+0.2
+0.2
-0.5
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.3
-0.4
+0.4
-0.5
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
+0.3
+0.2
-0.4
+1.3
+0.0
phage
P. simiae OR Antrim MOI 10
+1.2
+0.3
-0.3
+0.3
-0.0
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
+0.2
+0.0
+0.1
+1.6
+0.0
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
+0.3
+0.1
-0.2
+1.9
-0.1
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.2
+0.0
+0.0
+2.1
+0.0
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.5
+0.2
-0.5
+1.9
-0.1
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
+0.3
+0.1
+0.3
+1.5
-0.1
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.2
-0.1
+0.1
+2.2
-0.0
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.6
+0.6
-0.3
+2.2
-0.1
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.2
+0.1
+0.2
+2.5
-0.0
stress
Neomycin 0.04 mg/ml
+0.1
-0.0
+0.0
+4.3
+0.2
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