Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07440 and PS417_07445 are separated by 68 nucleotidesPS417_07445 and PS417_07450 are separated by 25 nucleotidesPS417_07450 and PS417_07455 are separated by 30 nucleotidesPS417_07455 and PS417_07460 are separated by 11 nucleotides PS417_07440: PS417_07440 - cyclic nucleotide-binding protein, at 1,636,997 to 1,637,482 _07440 PS417_07445: PS417_07445 - peptidase S9, at 1,637,551 to 1,639,593 _07445 PS417_07450: PS417_07450 - MFS transporter, at 1,639,619 to 1,640,155 _07450 PS417_07455: PS417_07455 - glutamine amidotransferase, at 1,640,186 to 1,640,962 _07455 PS417_07460: PS417_07460 - hypothetical protein, at 1,640,974 to 1,641,516 _07460
Group Condition PS417_07440 PS417_07445 PS417_07450 PS417_07455 PS417_07460
carbon source L-Valine (C) -1.1 -0.1 N.D. -1.6 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.0 N.D. -2.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 -0.0 N.D. -2.1 N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.1 +0.0 N.D. -1.7 N.D.
carbon source L-Valine (C) -0.5 +0.3 N.D. -1.5 N.D.
liquid stress Fraxetin 2 mM; liquid stress +0.1 -0.1 N.D. -1.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 +0.2 N.D. -1.1 N.D.
motility inner cut, LB soft agar motility assay -0.3 +0.1 N.D. -1.3 N.D.
stress LB_noSalt with Chloride 1100 mM -0.9 +0.3 N.D. -0.6 N.D.
phage P. simiae Grant Run MOI 10 +0.5 +0.1 N.D. -1.4 N.D.
solid stress Fraxetin 3 mM; solid stress +0.5 -0.3 N.D. -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +0.1 N.D. -1.1 N.D.
carbon source D-Glucose (C) +0.8 -0.1 N.D. -0.9 N.D.
phage P. simiae OR Antrim MOI 10 +0.7 +0.1 N.D. -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +0.4 N.D. -0.7 N.D.
seeds Growth on radish seeds for 72 hours -0.7 -0.1 N.D. +1.3 N.D.
soil soil sample 4; outgrowth in LB -0.5 +0.4 N.D. +0.9 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.8 +0.2 N.D. +1.4 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.4 +0.0 N.D. +1.4 N.D.
soil soil sample 7; outgrowth in LB -0.3 +0.4 N.D. +1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.0 N.D. +1.7 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 +0.6 N.D. +1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.5 N.D. +1.5 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.1 +0.0 N.D. +1.8 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 -0.1 N.D. +1.0 N.D.
soil soil sample 3; outgrowth in LB +0.4 +0.4 N.D. +0.9 N.D.
soil soil sample 5; outgrowth in LB +0.1 +0.4 N.D. +1.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.1 N.D. +1.7 N.D.
phage P. simiae OR Antrim MOI 10 +0.2 +0.2 N.D. +1.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +0.3 N.D. +1.2 N.D.
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