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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1459 and GFF1460 are separated by 114 nucleotides
GFF1460 and GFF1461 are separated by 2 nucleotides
GFF1461 and GFF1462 overlap by 4 nucleotides
GFF1462 and GFF1463 are separated by 51 nucleotides
GFF1459 - Glutathione S-transferase (EC 2.5.1.18), at 51,081 to 51,731
GFF1459
GFF1460 - Enoyl-CoA hydratase/isomerase, at 51,846 to 52,592
GFF1460
GFF1461 - Enoyl-CoA hydratase (EC 4.2.1.17), at 52,595 to 53,401
GFF1461
GFF1462 - L-carnitine dehydratase/bile acid-inducible protein F, at 53,398 to 54,600
GFF1462
GFF1463 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 54,652 to 55,713
GFF1463
Group
Condition
GFF1459
GFF1460
GFF1461
GFF1462
GFF1463
complex community
Community=Kojac gum; Passage=4
+0.1
-1.1
-1.0
+0.8
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.2
-0.3
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.8
-0.0
+0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.7
+0.0
+0.2
+0.3
complex community
Community=arabino-guar; Passage=4
-0.2
-0.3
+0.2
-0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.4
-0.6
+0.1
+0.1
complex community
Community=guar; Passage=4
-0.5
-0.2
-0.1
+0.2
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.2
-0.1
+0.3
-0.2
complex community
Community=guar; Passage=4
-0.4
+1.1
-0.3
-0.1
-0.5
phage
phage_bap4
+0.0
+0.3
+0.0
+0.1
-0.6
no phage control
no phage control
+0.1
+0.2
-0.2
+0.2
-0.4
phage
phage_bap4
-0.2
+0.3
-0.0
+0.1
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.1
+0.4
+0.2
-0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.2
-0.2
+0.3
-0.2
complex community
Community=arabino-guar; Passage=4
+0.6
-0.8
+0.5
+0.5
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.2
-0.3
+0.3
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.2
-0.0
+0.5
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.0
-0.2
+0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.3
-0.2
+0.1
+0.2
phage
phage_bap4
+0.0
+0.5
-0.1
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.7
-0.2
-0.0
+0.2
complex community
Community=arabino-guar; Passage=4
-0.2
-0.1
+0.4
+0.2
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.4
-0.3
+0.5
+0.1
complex community
Community=Kojac gum; Passage=1
-0.1
+0.4
+0.2
+0.3
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.5
-0.1
+0.1
+0.3
complex community
Community=arabino-guar; Passage=4
-0.4
+0.5
-0.4
+0.4
+0.6
complex community
Community=guar; Passage=4
+0.2
+0.6
-0.4
-0.0
+0.4
complex community
Community=guar; Passage=4
-0.1
+0.8
+0.4
-0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.5
-0.0
+0.4
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.2
+1.0
+0.0
+0.3
+0.0
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