Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07380 and PS417_07385 are separated by 107 nucleotidesPS417_07385 and PS417_07390 are separated by 164 nucleotidesPS417_07390 and PS417_07395 are separated by 68 nucleotidesPS417_07395 and PS417_07400 are separated by 154 nucleotides PS417_07380: PS417_07380 - hypothetical protein, at 1,625,850 to 1,626,143 _07380 PS417_07385: PS417_07385 - 2-hydroxyacid dehydrogenase, at 1,626,251 to 1,627,183 _07385 PS417_07390: PS417_07390 - hypothetical protein, at 1,627,348 to 1,630,857 _07390 PS417_07395: PS417_07395 - NADH dehydrogenase, at 1,630,926 to 1,631,510 _07395 PS417_07400: PS417_07400 - hypothetical protein, at 1,631,665 to 1,632,114 _07400
Group Condition PS417_07380 PS417_07385 PS417_07390 PS417_07395 PS417_07400
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 -0.6 +0.2 N.D. -1.1
phage P. simiae OR1 MOI 0.1 +0.1 -0.3 -0.2 N.D. -1.1
phage FRSphage -0.1 +0.2 -0.1 N.D. -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.2 +0.0 N.D. -1.0
seeds Growth on radish seeds for 72 hours -0.4 +0.2 +0.1 N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.2 +0.1 N.D. -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.3 -0.0 N.D. -1.0
phage JP1 MOI 0.1 +0.6 -0.3 -0.1 N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +0.3 +0.0 N.D. -0.9
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.4 +0.1 +0.1 N.D. -0.8
phage P. simiae OR Antrim MOI 1 -0.4 -0.6 -0.0 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 -0.3 -0.0 N.D. -0.6
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.2 +0.4 +0.1 N.D. -0.8
carbon source L-Valine (C) +0.4 +0.3 +0.2 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -0.3 +0.1 N.D. -0.5
root root sample 6; outgrowth in LB -1.0 -0.4 -0.1 N.D. +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.7 -0.2 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.4 +0.1 N.D. -0.3
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.4 +0.3 +0.1 N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.2 +0.1 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -0.0 +0.2 N.D. -0.4
stress Gentamicin 0.008 mg/ml -0.2 -0.5 +0.0 N.D. +1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.4 +0.1 N.D. +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.4 -0.2 +0.1 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.3 +0.2 N.D. +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.7 -0.2 -0.0 N.D. +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +0.0 -0.1 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +0.2 -0.0 N.D. +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.7 +0.5 -0.0 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +0.2 -0.0 N.D. +0.9
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PS417_07380
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PS417_07385
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PS417_07395
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PS417_07400
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