Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07370	PS417_07375	PS417_07380	PS417_07385	PS417_07390
root	root sample 6; outgrowth in LB	N.D.	-1.5	-1.0	-0.4	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-1.4	+0.1	-0.4	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-0.8	-0.2	-0.5	-0.1
stress	Chloramphenicol 0.015 mg/ml	N.D.	-0.4	-0.4	-0.7	-0.0
stress	Gentamicin 0.008 mg/ml	N.D.	-0.7	-0.2	-0.5	+0.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	-0.3	-0.4	-0.6	-0.0
soil	soil sample 4; outgrowth in LB	N.D.	-1.0	+0.1	-0.2	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	-0.4	+0.1	-0.7	-0.1
nitrogen source	Uridine (N)	N.D.	-1.2	+0.2	-0.0	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.8	+0.0	-0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.7	+0.3	-0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.5	+0.3	-0.4	+0.0
soil	soil sample 8; outgrowth in LB	N.D.	-0.7	+0.1	+0.3	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	-0.4	+0.6	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.5	+0.4	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.4	+0.7	-0.3	-0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-0.5	-0.2	+0.8	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.6	-0.5	+0.1	+0.1
phage	JP1 MOI 10	N.D.	-0.4	+0.5	+0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.6	+0.8	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.9	+0.0	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.9	-0.1	-0.2	+0.1
stress	methylglyoxal 0.032 vol%	N.D.	+1.1	-0.0	-0.2	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	N.D.	-0.3	+0.6	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	+0.8	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.5	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.8	-0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.9	-0.0	+0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.1	+0.7	+0.5	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+0.4	+0.7	+0.1