Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1448 and GFF1449 are separated by 12 nucleotidesGFF1449 and GFF1450 overlap by 4 nucleotidesGFF1450 and GFF1451 are separated by 5 nucleotidesGFF1451 and GFF1452 are separated by 43 nucleotides GFF1448 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 37,544 to 40,723 GFF1448 GFF1449 - Predicted pyridoxine biosynthesis protein (probably from glycolaldehide), at 40,736 to 42,049 GFF1449 GFF1450 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 42,046 to 43,314 GFF1450 GFF1451 - FIG00456379: hypothetical protein, at 43,320 to 43,859 GFF1451 GFF1452 - Predicted gluconate TRAP family transporter, DctM subunit, at 43,903 to 45,792 GFF1452
Group Condition GFF1448 GFF1449 GFF1450 GFF1451 GFF1452
complex community Community=arabino-guar; Passage=4 -0.1 +0.5 N.D. -3.7 +0.0
complex community Community=Kojac gum; Passage=4 -1.3 +1.3 N.D. -2.5 +0.7
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 +0.4 N.D. -1.9 +0.3
complex community Community=guar; Passage=4 -0.0 -0.5 N.D. -0.2 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 +0.0 N.D. -0.8 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.3 N.D. -0.7 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.2 N.D. -0.4 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.3 N.D. -0.5 -0.2
complex community Community=arabino-guar; Passage=4 +0.5 +0.2 N.D. -0.6 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.3 N.D. -0.3 -0.1
phage phage_bap4 +0.3 +0.2 N.D. -0.4 +0.0
complex community Community=arabino-guar; Passage=4 +0.4 +0.2 N.D. -0.7 +0.2
phage phage_bap4 +0.2 +0.3 N.D. -0.4 +0.1
complex community Community=guar; Passage=4 +0.3 -0.2 N.D. -0.5 +0.7
complex community Community=Locust bean gum; Passage=4 +0.3 +0.6 N.D. -0.7 +0.3
complex community Community=guar; Passage=4 +0.1 +0.4 N.D. +0.2 -0.3
complex community Community=Locust bean gum; Passage=4 -0.0 +0.2 N.D. +0.5 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 -0.3 N.D. +0.6 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.5 N.D. +0.4 -0.4
no phage control no phage control +0.2 +0.7 N.D. -0.5 +0.3
complex community Community=Kojac gum; Passage=1 +0.3 +0.6 N.D. -0.5 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.3 N.D. +0.5 -0.3
phage phage_bap4 +0.0 +0.6 N.D. -0.1 +0.3
complex community Community=guar; Passage=4 +0.1 +0.7 N.D. -0.6 +0.6
phage phage_bap4 +0.3 +0.4 N.D. -0.1 +0.2
no phage control no phage control +0.3 +0.2 N.D. +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.7 N.D. +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 +0.0 +0.7 N.D. +0.5 +0.2
complex community Community=arabino-guar; Passage=4 +0.4 +0.9 N.D. +0.4 -0.1
complex community Community=Locust bean gum; Passage=4 +0.3 +1.1 N.D. -0.1 +0.3
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