Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07355	PS417_07360	PS417_07365	PS417_07370	PS417_07375
root	root sample 6; outgrowth in LB	-0.2	+0.0	-0.0	N.D.	-1.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	-0.6	-0.1	N.D.	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.3	-0.2	N.D.	-0.5
nitrogen source	Uridine (N)	-0.2	-0.0	-0.0	N.D.	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-0.1	+0.0	N.D.	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.1	-0.2	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.1	-0.3	N.D.	-0.5
nitrogen source	Glycine (N)	+0.2	-0.5	-0.1	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.3	+0.2	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.0	-0.0	N.D.	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.1	+0.4	-0.2	N.D.	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.6	-0.3	N.D.	-0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.1	+0.3	-0.2	N.D.	-0.8
soil	soil sample 8; outgrowth in LB	+0.1	+0.4	-0.3	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.6	-0.1	N.D.	-0.2
stress	Doxycycline hyclate 0.001 mg/ml	+0.6	-0.6	+0.3	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.4	+0.1	N.D.	-0.5
soil	soil sample 4; outgrowth in LB	+0.1	+0.5	+0.1	N.D.	-1.0
stress	Gentamicin 0.008 mg/ml	+0.5	-0.3	+0.2	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.9	-0.1	N.D.	+0.3
solid stress	Fraxetin 2 mM; solid stress	-0.0	+0.5	+0.1	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-0.1	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	+0.1	+0.6	+0.1	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.7	-0.1	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.9	+0.2	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.8	+0.2	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+1.0	+0.4	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	-0.3	+0.2	N.D.	+0.9
seeds	Growth on radish seeds for 72 hours	+0.1	+0.9	+0.2	N.D.	-0.2
stress	methylglyoxal 0.032 vol%	-0.2	+0.6	+0.0	N.D.	+1.1