Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07350 and PS417_07355 are separated by 112 nucleotidesPS417_07355 and PS417_07360 overlap by 26 nucleotidesPS417_07360 and PS417_07365 are separated by 343 nucleotidesPS417_07365 and PS417_07370 are separated by 100 nucleotides PS417_07350: PS417_07350 - carbonic anhydrase, at 1,619,824 to 1,620,456 _07350 PS417_07355: PS417_07355 - transcriptional regulator, at 1,620,569 to 1,621,435 _07355 PS417_07360: PS417_07360 - ArtI protein, at 1,621,410 to 1,622,183 _07360 PS417_07365: PS417_07365 - glutamine synthetase, at 1,622,527 to 1,623,897 _07365 PS417_07370: PS417_07370 - SAM-dependent methyltransferase, at 1,623,998 to 1,624,597 _07370
Group Condition PS417_07350 PS417_07355 PS417_07360 PS417_07365 PS417_07370
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 -1.0 -0.0 N.D.
motility inner cut, LB soft agar motility assay N.D. -0.4 -0.3 -0.4 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.5 -0.3 -0.2 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. -0.1 -0.6 -0.1 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 -0.9 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.7 +0.2 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -0.9 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 +0.3 -0.1 N.D.
phage Wcs_1 N.D. +0.3 -0.5 -0.1 N.D.
soil soil sample 2; outgrowth in LB N.D. -0.6 +0.3 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.7 +0.6 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.4 +0.6 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 +0.5 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 +0.4 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -0.4 +0.2 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 -0.2 -0.2 N.D.
soil soil sample 8; outgrowth in LB N.D. +0.1 +0.4 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 +0.7 -0.1 N.D.
stress Doxycycline hyclate 0.001 mg/ml N.D. +0.6 -0.6 +0.3 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.2 +0.4 -0.3 N.D.
stress Gentamicin 0.008 mg/ml N.D. +0.5 -0.3 +0.2 N.D.
no stress control on plate growth on LB_noSalt plate N.D. +0.1 +0.6 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.4 -0.2 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.1 +0.7 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 +0.8 +0.2 N.D.
liquid stress Fraxetin 0.5 mM; liquid stress N.D. +0.2 +0.7 +0.1 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.2 +0.8 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.2 +1.0 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.1 +0.9 +0.2 N.D.
seeds Growth on radish seeds for 72 hours N.D. +0.1 +0.9 +0.2 N.D.
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