Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07335	PS417_07340	PS417_07345	PS417_07350	PS417_07355
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	N.D.	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.0	N.D.	N.D.	-0.7
phage	JP1 MOI 10	-0.3	-0.6	N.D.	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.2	N.D.	N.D.	-0.3
soil	soil sample 2; outgrowth in LB	-0.0	-0.3	N.D.	N.D.	-0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.2	-0.5	N.D.	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	N.D.	N.D.	-0.7
phage	JP1 MOI 0.1	-0.4	-0.4	N.D.	N.D.	+0.2
phage	P. simiae OR Antrim MOI 10	+0.2	-0.1	N.D.	N.D.	-0.6
phage	P. simiae OR1 MOI 0.1	-0.3	-0.5	N.D.	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.3	N.D.	N.D.	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.1	N.D.	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	N.D.	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	N.D.	N.D.	-0.4
nophagecontrol	Only library	+0.4	-0.4	N.D.	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.5	N.D.	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.2	N.D.	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.1	N.D.	N.D.	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.1	N.D.	N.D.	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	+0.2	N.D.	N.D.	-0.5
phage	P. simiae OR Antrim MOI 0.1	+0.4	+0.1	N.D.	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	+0.2	N.D.	N.D.	+0.5
soil	soil sample 6; outgrowth in LB	+0.6	+0.1	N.D.	N.D.	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.2	N.D.	N.D.	-0.3
carbon source	L-Valine (C)	+0.2	-0.2	N.D.	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.1	N.D.	N.D.	-0.2
stress	Gentamicin 0.008 mg/ml	+0.3	-0.0	N.D.	N.D.	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	+0.2	N.D.	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	N.D.	N.D.	+0.4
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	+0.3	N.D.	N.D.	+0.6