Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07305	PS417_07310	PS417_07315	PS417_07325	PS417_07330
agar plate interaction control	Taped volatile agar plate with no fungus	-1.3	-0.4	-0.8	+0.3	-0.9
seeds	Growth on radish seeds for 72 hours	-2.4	-0.2	-0.4	+0.3	+0.1
stress	methylglyoxal 0.032 vol%	-0.9	+0.3	-1.2	-0.4	+0.1
phage	P. simiae OR Antrim MOI 10	-1.9	-0.1	-0.2	+0.3	-0.1
seeds	Growth on radish seeds for 72 hours	-1.9	+0.5	-1.2	+0.3	+0.5
liquid stress	Fraxetin 3 mM; liquid stress	-1.1	-0.2	-0.3	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.4	+0.3	-0.5	-0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.2	-0.1	-0.1	+0.2
phage	P. simiae ORA MOI 10	-2.2	+0.4	-0.1	-0.0	+0.2
phage	JP1 MOI 0.1	-1.6	+0.2	-0.1	-0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.1	-0.5	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.3	+0.1	-0.6	+0.3
motility	inner cut, LB soft agar motility assay	-1.8	+0.2	+0.4	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.6	+0.3	-0.2	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.4	-0.1	-0.4	+0.8	-0.1
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1	-1.5	+0.1	-0.3	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	-0.1	-0.0	+0.5	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-1.9	+0.3	+0.1	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.1	+0.2	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.1	+0.1	+0.2	+0.5
root	root sample 6; outgrowth in LB	-0.9	-0.2	+0.1	+0.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.4	+0.2	+0.7	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	-0.2	-0.5	+0.8	-0.0
seeds	Growth on radish seeds for 72 hours	-1.7	+0.8	+0.3	-0.0	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-0.5	-0.6	+0.7	-0.3
carbon source	L-Valine (C)	+0.7	+0.6	-0.5	+0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.1	-0.5	+0.5	+0.2
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.4	-0.1	+1.2	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.5	+0.1	+0.2	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.3	+0.0	-0.0	+0.1	-0.2