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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1435 and GFF1436 are separated by 52 nucleotides
GFF1436 and GFF1437 are separated by 163 nucleotides
GFF1437 and GFF1438 are separated by 81 nucleotides
GFF1438 and GFF1439 are separated by 277 nucleotides
GFF1435 - BUG/TctC family periplasmic protein, at 25,579 to 26,580
GFF1435
GFF1436 - CaiB/BaiF family protein, at 26,633 to 27,841
GFF1436
GFF1437 - Transcriptional regulator, LysR family, at 28,005 to 28,901
GFF1437
GFF1438 - no description, at 28,983 to 29,237
GFF1438
GFF1439 - putative inositol monophosphatase, at 29,515 to 30,348
GFF1439
Group
Condition
GFF1435
GFF1436
GFF1437
GFF1438
GFF1439
complex community
Community=arabino-guar; Passage=4
-0.4
+0.0
-0.3
-0.2
-0.7
complex community
Community=guar; Passage=4
-1.9
+0.1
+0.6
-0.1
+0.0
complex community
Community=arabino-guar; Passage=4
+0.1
+0.5
-0.5
-0.0
-1.1
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.2
+0.1
-0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
+0.1
+0.1
-0.3
-0.6
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
+0.1
+0.1
-0.1
-0.5
complex community
Community=arabino-guar; Passage=4
+0.0
-0.2
+0.3
+0.6
-0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
+0.2
+0.2
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.4
+0.1
+0.2
-0.4
+0.1
phage
phage_bap4
-0.2
+0.1
+0.1
+0.2
+0.3
phage
phage_bap4
-0.3
+0.0
+0.1
+0.3
+0.5
complex community
Community=arabino-guar; Passage=4
+0.5
-0.1
-0.3
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.5
+0.3
+0.0
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.6
+0.2
+0.0
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.2
+0.2
+0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.6
+0.4
+0.1
-0.3
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
+0.1
+0.3
+0.2
-0.3
phage
phage_bap4
+0.1
+0.2
-0.0
+0.4
+0.2
phage
phage_bap4
-0.2
+0.3
+0.0
+0.4
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.5
-0.0
+0.2
+0.3
no phage control
no phage control
+0.3
+0.3
+0.2
+0.1
+0.2
complex community
Community=Locust bean gum; Passage=1
+0.5
+0.2
+0.2
+0.2
-0.1
complex community
Community=guar; Passage=4
+0.2
+0.4
-0.1
-0.0
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
+0.2
-0.0
+0.5
complex community
Community=Kojac gum; Passage=4
+0.5
+0.3
+0.5
-0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.9
+0.3
+0.1
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
+0.1
+0.4
+0.2
+0.3
complex community
Community=guar; Passage=4
-0.1
+0.1
+0.5
+0.3
+0.6
complex community
Community=Locust bean gum; Passage=4
+1.0
+0.5
-0.3
+0.1
+0.7
complex community
Community=Locust bean gum; Passage=4
+1.0
+0.2
-0.1
+0.1
+1.0
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