Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_07250	PS417_07255	PS417_07260	PS417_07265	PS417_07270
carbon source	2-Deoxy-D-Ribose (C)	-5.5	-6.3	-5.1	-4.1	-0.5
carbon source	2-Deoxy-D-Ribose (C)	-5.7	-3.5	-5.4	-4.5	-0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-6.9	-3.4	-4.8	-4.1	+0.0
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-3.5	-3.2	-4.6	-3.4	-0.2
carbon source	2-Deoxy-D-Ribose (C)	-4.7	-3.2	-4.0	-3.0	+0.0
carbon source	2-Deoxy-D-Ribose (C)	-4.1	-2.7	-3.5	-2.9	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-3.5	-2.9	-3.3	-3.3	+0.0
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-4.4	-1.8	-3.8	-2.8	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	-1.3	-1.8	-0.9	-0.6
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-3.5	-0.3	-0.7	-0.6	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-1.6	-0.9	-1.4	-0.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.4	-0.2	-0.2	-0.4
carbon source	octanoate (C)	+0.1	-0.0	+0.1	+0.2	-2.2
motility	inner cut, LB soft agar motility assay	-0.5	-0.5	+0.1	-0.0	-0.9
stress	methylglyoxal 0.032 vol%	-0.4	+0.3	-0.1	-0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.5	+0.1	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.4	+0.1	+0.3	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-0.1	-0.3	-0.3	-0.6
carbon source	octanoate (C)	+0.1	+0.1	+0.4	+0.2	-1.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.8	-0.4	-0.1	+0.5
soil	soil sample 2; outgrowth in LB	+0.1	-0.8	+0.6	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-0.1	-0.1	-0.7
carbon source	L-Valine (C)	+0.7	-0.2	-0.5	+0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.6	-0.0	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+1.1	-0.2	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.3	+0.7	-0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.6	+0.5	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+0.3	+0.4	+0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.4	+0.4	+0.4	+0.4
seeds	Growth on radish seeds for 72 hours	+0.1	+0.2	+0.2	+0.4	+1.2