Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF1423 and GFF1424 overlap by 4 nucleotidesGFF1424 and GFF1425 overlap by 1 nucleotidesGFF1425 and GFF1426 are separated by 10 nucleotidesGFF1426 and GFF1427 are separated by 7 nucleotides GFF1423 - Phenylacetate ABC transporter, permease protein 1, at 14,424 to 15,296 GFF1423 GFF1424 - Phenylacetate ABC transporter, permease protein 2, at 15,293 to 16,225 GFF1424 GFF1425 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 16,225 to 16,974 GFF1425 GFF1426 - Phenylacetate ABC transporter, ATP-binding protein 2, at 16,985 to 17,704 GFF1426 GFF1427 - Mandelate racemase (EC 5.1.2.2), at 17,712 to 18,788 GFF1427
Group Condition GFF1423 GFF1424 GFF1425 GFF1426 GFF1427
complex community Community=guar; Passage=4 -0.5 +0.1 N.D. -1.0 +0.2
complex community Community=Locust bean gum; Passage=4 -0.4 -1.1 N.D. +0.4 +0.1
complex community Community=guar; Passage=4 -1.1 +0.2 N.D. +0.5 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.8 -0.0 N.D. +0.3 +0.2
complex community Community=Kojac gum; Passage=1 -0.1 -0.1 N.D. +0.5 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.2 N.D. +0.5 -0.0
phage phage_bap4 +0.3 -0.1 N.D. -0.2 +0.3
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.5 N.D. -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 +0.0 N.D. +0.4 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.5 +0.1 N.D. +0.9 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 +0.0 N.D. +0.8 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.1 N.D. +0.2 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 +0.2 N.D. +0.4 +0.1
complex community Community=arabino-guar; Passage=4 -0.3 +0.4 N.D. +0.8 -0.4
complex community Community=Locust bean gum; Passage=1 +0.0 -0.1 N.D. +0.7 +0.1
complex community Community=guar; Passage=4 +0.1 +0.1 N.D. +0.6 -0.1
complex community Community=arabino-guar; Passage=4 -0.2 +0.2 N.D. +1.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.1 N.D. +0.6 +0.2
complex community Community=guar; Passage=4 -0.5 +0.0 N.D. +0.9 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 +0.2 N.D. +0.5 +0.2
no phage control no phage control +0.4 -0.0 N.D. +0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.1 N.D. +0.5 +0.0
phage phage_bap4 +0.3 +0.0 N.D. +0.4 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.3 N.D. +0.1 +0.3
complex community Community=arabino-guar; Passage=4 +0.5 +0.4 N.D. -0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.3 +0.2 N.D. +0.6 +0.1
phage phage_bap4 +0.4 -0.0 N.D. +0.6 +0.2
complex community Community=Locust bean gum; Passage=4 -1.5 +0.4 N.D. +1.6 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.5 +0.2 N.D. +0.4 +0.3
complex community Community=Locust bean gum; Passage=4 +1.2 +0.2 N.D. +0.8 -0.1
remove
GFF1423
plot		 remove
GFF1424
plot		 remove
GFF1425		 remove
GFF1426
plot		 remove
GFF1427
plot