Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07220	PS417_07225	PS417_07230	PS417_07240	PS417_07245
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-0.2	-0.1	-5.4	-5.6
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.0	+0.1	+0.1	-4.1	-6.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.1	-0.0	-0.1	-3.6	-6.5
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	-0.0	-0.1	-5.7	-4.3
carbon source	2-Deoxy-D-Ribose (C)	-0.0	+0.0	-0.1	-4.0	-5.5
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	+0.1	-0.2	-2.9	-6.4
carbon source	2-Deoxy-D-Ribose (C)	-0.2	+0.0	-0.2	-2.6	-4.4
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.1	+0.0	-2.8	-4.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.0	-0.2	-0.2	-1.2	-4.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	+0.0	-0.2	-1.2	-2.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	-0.1	-0.2	-3.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	-0.2	+0.3	-1.6	-1.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	+0.2	-0.0	-0.4	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.4	-0.1	-0.7	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.7	-0.0	-0.9	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.3	+0.1	+0.4	-0.9
phage	P. simiae OR Antrim MOI 1	+0.1	-0.7	+0.1	-0.7	+0.6
seeds	Growth on radish seeds for 72 hours	+0.4	+0.4	+0.1	-0.9	-0.5
stress	methylglyoxal 0.032 vol%	-0.2	-0.4	+0.2	-1.2	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.4	-0.0	-1.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.5	-0.1	-0.4	+1.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.7	-0.2	-0.4	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.2	+0.1	-0.6	+0.8
soil	soil sample 6; outgrowth in LB	-0.2	-0.7	-0.1	+0.0	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	+0.1	+1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.3	+0.0	+1.1	+0.5
supernatant control	Vogels_fungal_media 0.1X	-0.2	+0.2	+0.0	+0.9	-0.6
root	root sample 6; outgrowth in LB	+0.1	-0.7	+0.6	+0.2	+0.4
solid stress	Fraxetin 1 mM; solid stress	-0.2	+0.3	-0.1	+0.6	+0.7
phage	JP1 MOI 1	+0.1	+0.3	-0.4	+0.5	+1.1