Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07215	PS417_07220	PS417_07225	PS417_07230	PS417_07240
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.2	+0.1	-0.0	-0.1	-5.7
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-0.1	-0.2	-0.1	-5.4
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-0.0	+0.0	-0.1	-4.0
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.1	-0.0	+0.1	+0.1	-4.1
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.1	+0.1	-0.0	-0.1	-3.6
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	+0.1	+0.1	-0.2	-2.9
carbon source	2-Deoxy-D-Ribose (C)	+0.2	-0.2	+0.0	-0.2	-2.6
carbon source	2-Deoxy-D-Ribose (C)	-0.1	+0.1	+0.1	+0.0	-2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.4	-0.4	-0.1	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.4	+0.0	-0.2	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.0	+0.0	-0.2	+0.3	-1.6
stress	methylglyoxal 0.032 vol%	+0.1	-0.2	-0.4	+0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.1	-0.2	-0.2	-1.2
phage	P. simiae OR Antrim MOI 1	-0.2	+0.1	-0.7	+0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.3	-0.6	+0.1	-0.6
soil	soil sample 2; outgrowth in LB	-0.2	-0.1	-0.6	+0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.1	+0.4	-0.0	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.1	-0.6	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.5	-0.7	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.4	+0.2	-0.3	-0.8
soil	soil sample 5; outgrowth in LB	+0.5	-0.2	-0.2	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	+0.7	-0.0	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	-0.4	+0.1	+1.0
phage	P. simiae ORA MOI 0.1	+0.3	+0.3	+0.1	+0.3	-1.0
phage	JP1 MOI 1	-0.5	+0.1	+0.3	-0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.1	-0.3	+0.0	+1.1
seeds	Growth on radish seeds for 72 hours	+0.3	+0.4	+0.4	+0.1	-0.9
root	root sample 6; outgrowth in LB	+0.3	+0.1	-0.7	+0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.3	-0.2	-0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.2	-0.4	+0.1	+0.9