Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07210 and PS417_07215 are separated by 11 nucleotidesPS417_07215 and PS417_07220 are separated by 155 nucleotidesPS417_07220 and PS417_07225 overlap by 9 nucleotidesPS417_07225 and PS417_07230 overlap by 4 nucleotides PS417_07210: PS417_07210 - allantoate amidohydrolase, at 1,591,476 to 1,592,705 _07210 PS417_07215: PS417_07215 - acetylpolyamine aminohydrolase, at 1,592,717 to 1,593,745 _07215 PS417_07220: PS417_07220 - LysR family transcriptional regulator, at 1,593,901 to 1,594,803 _07220 PS417_07225: PS417_07225 - molybdenum ABC transporter substrate-binding protein, at 1,594,795 to 1,595,553 _07225 PS417_07230: PS417_07230 - citrate-proton symporter, at 1,595,550 to 1,596,857 _07230
Group Condition PS417_07210 PS417_07215 PS417_07220 PS417_07225 PS417_07230
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.2 +0.2 -0.6 +0.0
no phage control Time6-nophage -0.2 -0.5 -0.0 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.1 -0.2 -0.6 -0.1
soil soil sample 2; outgrowth in LB -0.6 -0.2 -0.1 -0.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.0 -0.5 -0.2 +0.1
phage JP1 MOI 10 +0.2 -0.3 -0.5 -0.2 -0.2
phage P. simiae OR Antrim MOI 1 -0.4 -0.2 +0.1 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.2 -1.1 -0.3 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.4 -0.4 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.2 +0.2 -0.2 -0.7 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -0.2 +0.2 -0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 -0.3 -0.3 -0.5 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -0.4 -0.4 -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.4 -0.3 -0.4 +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 -0.1 -0.0 -0.8 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.0 +0.4 +0.2 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 -0.0 -0.7 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.2 +0.5 -0.7 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.3 -0.1 -0.6 +0.2
carbon source L-Valine (C) +0.6 -0.5 +0.1 -0.3 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB +0.4 -0.4 +0.2 -0.2 +0.1
root root sample 6; outgrowth in LB -0.2 +0.3 +0.1 -0.7 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +0.2 -0.5 -0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.7 -0.3 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.3 -0.1 -0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.4 +0.3 +0.7 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 -0.3 -0.2 +0.4 +0.2
seeds Growth on radish seeds for 72 hours -0.8 +0.3 +0.4 +0.4 +0.1
phage JP1 MOI 1 +0.5 +0.3 +0.1 -0.3 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.3 +0.1 +0.4 -0.0
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