Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00700	PS417_00705	PS417_00710	PS417_00715	PS417_00720
carbon source	octanoate (C)	N.D.	-5.5	-5.1	-3.2	-4.4
carbon source	octanoate (C)	N.D.	-4.4	-5.1	-3.6	-4.1
supernatant control	Vogels_fungal_media 0.1X	N.D.	-5.0	+0.2	-0.2	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-3.1	+0.1	-0.4	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-2.4	-0.2	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-3.4	+0.1	-0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.7	-0.4	+0.1	-0.6
supernatant control	Vogels_fungal_media 0.1X	N.D.	-1.7	-0.1	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.6	+0.1	+0.1	-0.1
phage	JP1 MOI 10	N.D.	-1.3	-0.5	+0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.2	-0.4	-0.1	-0.6
stress	Cisplatin 0.01 mg/ml	N.D.	-2.3	-0.2	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.9	-0.0	-0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-2.6	+0.2	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.7	-0.1	-0.1	-0.1
phage	JP1 MOI 1	N.D.	-1.7	-0.0	-0.1	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-1.9	+0.0	+0.0	-0.2
phage	P. simiae OR1 MOI 0.1	N.D.	-1.8	-0.2	-0.0	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.2	-0.0	-0.1	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-1.6	-0.1	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.5	+0.2	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.9	+0.0	+0.4	+0.1
stress	R2A with Fusaric 120 ug/mL	N.D.	+0.4	-0.7	-0.6	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.8	+0.3	-0.0	+0.4
seeds	Growth on radish seeds for 72 hours	N.D.	-1.2	+0.2	+0.4	-0.3
stress	R2A with Fusaric 120 ug/mL	N.D.	+0.8	-0.4	-0.6	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	+1.4	+0.3	+0.2	-0.4
soil	soil sample 7; outgrowth in LB	N.D.	+2.1	+0.3	-0.5	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+2.0	+0.3	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+2.6	+0.1	-0.2	+0.4