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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF139 and GFF140 are separated by 121 nucleotides
GFF140 and GFF141 are separated by 24 nucleotides
GFF141 and GFF142 are separated by 189 nucleotides
GFF142 and GFF143 overlap by 18 nucleotides
GFF139 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 167,049 to 168,284
GFF139
GFF140 - Putative transport protein, at 168,406 to 169,347
GFF140
GFF141 - Transcriptional regulator, AraC family, at 169,372 to 170,415
GFF141
GFF142 - Oxidoreductase, at 170,605 to 171,657
GFF142
GFF143 - Dethiobiotin synthase BioD (EC 6.3.3.3), at 171,640 to 172,386
GFF143
Group
Condition
GFF139
GFF140
GFF141
GFF142
GFF143
complex community
Community=Kojac gum; Passage=4
+0.4
+0.1
-0.2
-0.3
-3.9
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.5
-0.4
-0.3
-0.9
complex community
Community=guar; Passage=4
+0.3
-0.2
+0.4
-0.5
-2.1
complex community
Community=arabino-guar; Passage=4
+0.1
-0.4
+0.2
+0.1
-2.1
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.2
-0.1
-0.8
-0.8
complex community
Community=Locust bean gum; Passage=1
-0.1
+0.1
-0.0
-0.1
-1.6
complex community
Community=arabino-guar; Passage=4
-0.1
+0.4
-0.0
-0.3
-1.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.1
+0.1
+0.3
-1.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
+0.1
-0.0
+0.1
-1.1
phage
phage_bap4
+0.0
-0.0
+0.0
-0.0
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.2
-0.2
+0.1
-1.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.0
-0.0
+0.1
-0.9
complex community
Community=guar; Passage=4
-0.2
+0.1
-0.1
+0.1
-0.5
complex community
Community=arabino-guar; Passage=4
+0.2
+0.0
-0.4
+0.3
-0.8
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
+0.4
-0.0
+0.3
-1.3
complex community
Community=guar; Passage=4
-0.1
-0.1
-0.1
+0.4
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.3
+0.1
+0.1
-0.9
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.2
-0.0
+0.1
-0.5
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.3
+0.1
-0.0
-0.5
complex community
Community=guar; Passage=4
-0.3
+0.1
-0.0
+0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.1
+0.1
+0.2
-0.8
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.5
+0.4
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.2
+0.1
+0.2
-0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.2
+0.1
+0.1
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.5
-0.2
-0.0
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
+0.2
-0.1
+0.4
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.3
+0.0
+0.4
-0.3
complex community
Community=Kojac gum; Passage=1
-0.0
-0.0
-0.1
+0.0
+0.7
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
-0.1
+0.2
+0.6
complex community
Community=arabino-guar; Passage=4
+0.2
+0.1
+0.3
+0.5
-0.2
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