Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07140	PS417_07145	PS417_07150	PS417_07155	PS417_07160
solid stress	Fraxetin 3 mM; solid stress	-3.2	N.D.	-1.0	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	N.D.	-0.4	-0.1	-1.0
solid stress	Fraxetin 3 mM; solid stress	-2.2	N.D.	-0.3	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.8	N.D.	-0.2	+0.5	-0.1
solid stress	Fraxetin 3 mM; solid stress	-1.9	N.D.	-0.6	+0.1	-0.3
solid stress	Fraxetin 3 mM; solid stress	-1.8	N.D.	-0.4	-0.1	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.9	N.D.	+0.1	-0.5	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-2.9	N.D.	+0.3	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.2	N.D.	-0.2	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	N.D.	+0.1	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-2.0	N.D.	+0.0	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.0	N.D.	+0.5	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.8	N.D.	-0.2	+0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.7	N.D.	+0.1	+0.3	-0.3
stress	Neomycin 0.04 mg/ml	-2.4	N.D.	+0.8	+0.1	-0.0
soil	soil sample 3; outgrowth in LB	-2.0	N.D.	-0.1	+0.4	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	-2.0	N.D.	+0.3	+0.2	-0.1
carbon source	octanoate (C)	-1.6	N.D.	-0.3	-0.4	+0.7
liquid stress	Fraxetin 3 mM; liquid stress	-1.9	N.D.	+0.3	+0.6	+0.0
carbon source	octanoate (C)	-1.4	N.D.	-0.1	+0.0	+0.9
carbon source	L-Valine (C)	+1.6	N.D.	-0.9	-0.9	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	N.D.	-0.4	-0.5	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.6	N.D.	-0.1	-0.1	-0.8
carbon source	L-Valine (C)	+1.7	N.D.	-0.8	+0.1	-0.2
soil	soil sample 4; outgrowth in LB	+1.7	N.D.	-0.2	-0.3	+0.6
soil	soil sample 5; outgrowth in LB	+1.5	N.D.	+0.2	-0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.2	N.D.	+0.3	-0.4	-0.3
root	root sample 6; outgrowth in LB	+2.0	N.D.	+0.1	+0.1	+0.2
ecofab	LB in EcoFAB_3.5mL	+2.4	N.D.	+0.0	+0.1	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+2.5	N.D.	+0.1	+0.7	+0.4