Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07130 and PS417_07135 are separated by 234 nucleotidesPS417_07135 and PS417_07140 are separated by 65 nucleotidesPS417_07140 and PS417_07145 are separated by 94 nucleotidesPS417_07145 and PS417_07150 are separated by 30 nucleotides PS417_07130: PS417_07130 - RNA polymerase sigma-H factor AlgU, at 1,576,224 to 1,577,186 _07130 PS417_07135: PS417_07135 - serine peptidase, at 1,577,421 to 1,578,860 _07135 PS417_07140: PS417_07140 - peptidase M48, at 1,578,926 to 1,580,359 _07140 PS417_07145: PS417_07145 - response regulator SirA, at 1,580,454 to 1,580,693 _07145 PS417_07150: PS417_07150 - permase, at 1,580,724 to 1,581,794 _07150
Group Condition PS417_07130 PS417_07135 PS417_07140 PS417_07145 PS417_07150
solid stress Fraxetin 3 mM; solid stress -0.1 N.D. -3.2 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -2.8 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -2.4 N.D. -0.4
soil soil sample 3; outgrowth in LB -0.8 N.D. -2.0 N.D. -0.1
solid stress Fraxetin 3 mM; solid stress -0.2 N.D. -2.2 N.D. -0.3
solid stress Fraxetin 3 mM; solid stress -0.1 N.D. -1.9 N.D. -0.6
solid stress Fraxetin 3 mM; solid stress -0.2 N.D. -1.8 N.D. -0.4
liquid stress Fraxetin 3 mM; liquid stress +0.2 N.D. -2.9 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.2 N.D. -2.0 N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 N.D. -1.8 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. -2.2 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 N.D. -1.4 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. -2.0 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. -2.1 N.D. +0.1
liquid stress Fraxetin 3 mM; liquid stress -0.0 N.D. -2.0 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. -1.7 N.D. -0.2
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.5 N.D. -2.1 N.D. -0.1
carbon source octanoate (C) +0.3 N.D. -1.6 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 N.D. -1.7 N.D. -0.1
stress Neomycin 0.04 mg/ml +0.2 N.D. -2.4 N.D. +0.8
stress R2A with Fusaric 120 ug/mL +0.2 N.D. -1.8 N.D. +0.1
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.4 N.D. -1.9 N.D. +0.1
liquid stress Fraxetin 3 mM; liquid stress +0.2 N.D. -1.9 N.D. +0.3
carbon source L-Valine (C) +0.1 N.D. +1.6 N.D. -0.9
carbon source L-Valine (C) +0.3 N.D. +1.7 N.D. -0.8
root root sample 6; outgrowth in LB -0.2 N.D. +2.0 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. +2.2 N.D. +0.3
ecofab LB in EcoFAB_3.5mL -0.1 N.D. +2.4 N.D. +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 N.D. +2.0 N.D. +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 N.D. +2.5 N.D. +0.1
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PS417_07135
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PS417_07145
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