Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07125 and PS417_07130 are separated by 15 nucleotidesPS417_07130 and PS417_07135 are separated by 234 nucleotidesPS417_07135 and PS417_07140 are separated by 65 nucleotidesPS417_07140 and PS417_07145 are separated by 94 nucleotides PS417_07125: PS417_07125 - RNA polymerase sigma-H factor AlgU, at 1,575,621 to 1,576,208 _07125 PS417_07130: PS417_07130 - RNA polymerase sigma-H factor AlgU, at 1,576,224 to 1,577,186 _07130 PS417_07135: PS417_07135 - serine peptidase, at 1,577,421 to 1,578,860 _07135 PS417_07140: PS417_07140 - peptidase M48, at 1,578,926 to 1,580,359 _07140 PS417_07145: PS417_07145 - response regulator SirA, at 1,580,454 to 1,580,693 _07145
Group Condition PS417_07125 PS417_07130 PS417_07135 PS417_07140 PS417_07145
solid stress Fraxetin 3 mM; solid stress N.D. -0.1 N.D. -3.2 N.D.
soil soil sample 3; outgrowth in LB N.D. -0.8 N.D. -2.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 N.D. -2.8 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. +0.2 N.D. -2.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 N.D. -2.4 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.2 N.D. -2.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.3 N.D. -2.0 N.D.
stress Neomycin 0.04 mg/ml N.D. +0.2 N.D. -2.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.8 N.D. -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.2 N.D. -2.0 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.0 N.D. -2.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.1 N.D. -1.9 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.2 N.D. -1.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 N.D. -2.2 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.1 N.D. -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.1 N.D. -1.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. -2.1 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. +0.2 N.D. -1.9 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. +0.5 N.D. -2.1 N.D.
stress R2A with Fusaric 120 ug/mL N.D. +0.2 N.D. -1.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.3 N.D. -1.7 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. +0.4 N.D. -1.9 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.4 N.D. -1.7 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.1 N.D. +1.9 N.D.
root root sample 6; outgrowth in LB N.D. -0.2 N.D. +2.0 N.D.
carbon source L-Valine (C) N.D. +0.3 N.D. +1.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 N.D. +2.2 N.D.
ecofab LB in EcoFAB_3.5mL N.D. -0.1 N.D. +2.4 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.3 N.D. +2.0 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.4 N.D. +2.5 N.D.
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