Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07110 and PS417_07115 overlap by 32 nucleotidesPS417_07115 and PS417_07120 are separated by 462 nucleotidesPS417_07120 and PS417_07125 are separated by 32 nucleotidesPS417_07125 and PS417_07130 are separated by 15 nucleotides PS417_07110: PS417_07110 - hypothetical protein, at 1,572,513 to 1,572,959 _07110 PS417_07115: PS417_07115 - L-aspartate oxidase, at 1,572,928 to 1,574,544 _07115 PS417_07120: PS417_07120 - RNA polymerase sigma-H factor, at 1,575,007 to 1,575,588 _07120 PS417_07125: PS417_07125 - RNA polymerase sigma-H factor AlgU, at 1,575,621 to 1,576,208 _07125 PS417_07130: PS417_07130 - RNA polymerase sigma-H factor AlgU, at 1,576,224 to 1,577,186 _07130
Group Condition PS417_07110 PS417_07115 PS417_07120 PS417_07125 PS417_07130
stress Polymyxin B sulfate 0.006 mg/ml +0.1 +0.1 -4.3 N.D. -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 -0.0 -3.9 N.D. -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 -0.3 -3.2 N.D. +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.3 +0.0 -3.0 N.D. -0.1
nitrogen source Inosine (N) -0.4 -3.0 +0.0 N.D. -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 -0.0 -3.1 N.D. -0.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 +0.1 -2.6 N.D. -0.2
carbon source NAG (C) -0.0 -1.6 -0.6 N.D. -0.1
carbon source Carbon source D-Mannitol 5 mM -0.2 -1.3 -0.7 N.D. +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 -0.1 -2.3 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.1 -1.7 N.D. -0.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +0.0 -2.2 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 -0.1 -1.4 N.D. -0.8
carbon source NAG (C) +0.5 -2.0 -0.6 N.D. +0.0
stress LB_noSalt with Chloride 1100 mM -0.5 +0.2 -2.3 N.D. +0.6
carbon source Carbon source D-Mannitol 10 mM -0.6 -1.5 -0.1 N.D. +0.3
nitrogen source Cytosine (N) -0.4 -1.6 +0.4 N.D. -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.1 -0.1 -1.9 N.D. +0.3
phage P. simiae Grant Run MOI 0.1 +0.1 -0.1 -1.9 N.D. +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.2 -1.4 -0.8 N.D. +0.4
supernatant control Vogels_fungal_media; pH 5.5 -0.1 -0.9 -0.9 N.D. +0.3
stress LB_noSalt with Chloride 1100 mM +0.0 +0.1 -2.1 N.D. +0.5
carbon source D-Sorbitol (C) +0.2 -1.3 -0.4 N.D. +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.2 -0.9 -1.0 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.4 -1.0 -0.6 N.D. +0.3
phage JP1 MOI 0.1 +0.7 +0.2 -1.2 N.D. -0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.7 +0.1 -1.5 N.D. +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.3 +0.2 -1.2 N.D. +0.6
root root sample 6; outgrowth in LB -0.7 -0.6 +1.5 N.D. -0.2
agar plate interaction control Taped volatile agar plate with no fungus +0.7 +0.2 -0.9 N.D. +0.5
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PS417_07110
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PS417_07115
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PS417_07125
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