Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1399 and GFF1400 are separated by 39 nucleotidesGFF1400 and GFF1401 are separated by 103 nucleotidesGFF1401 and GFF1402 are separated by 99 nucleotidesGFF1402 and GFF1403 are separated by 31 nucleotides GFF1399 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 748,117 to 749,118 GFF1399 GFF1400 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 749,158 to 749,979 GFF1400 GFF1401 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 750,083 to 751,447 GFF1401 GFF1402 - 3-demethylubiquinone-9 3-methyltransferase, at 751,547 to 752,023 GFF1402 GFF1403 - MATE efflux family protein, at 752,055 to 753,473 GFF1403
Group Condition GFF1399 GFF1400 GFF1401 GFF1402 GFF1403
complex community Community=Locust bean gum; Passage=4 N.D. -0.7 -0.3 -0.6 -0.1
complex community Community=guar; Passage=4 N.D. -1.6 -0.1 +0.3 +0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.0 -0.6 -0.1 -0.2
phage phage_bap4 N.D. -0.7 -0.0 +0.1 -0.2
no phage control no phage control N.D. -0.6 +0.0 -0.1 -0.0
phage phage_bap4 N.D. -0.2 -0.1 -0.2 -0.0
complex community Community=guar; Passage=4 N.D. -0.4 -0.4 -0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.5 +0.0 -0.1 +0.1
complex community Community=Kojac gum; Passage=4 N.D. +0.4 -0.4 -0.5 +0.1
complex community Community=guar; Passage=4 N.D. -0.3 -0.3 +0.1 +0.0
phage phage_bap4 N.D. -0.3 -0.2 +0.3 -0.0
complex community Community=arabino-guar; Passage=4 N.D. +0.2 -0.5 +0.2 -0.0
phage phage_bap4 N.D. -0.3 -0.2 +0.2 +0.1
phage phage_bap4 N.D. -0.4 +0.2 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.1 +0.2 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.0 +0.4 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.2 +0.3 +0.1 +0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.6 -0.0 +0.3 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 +0.3 -0.2 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.9 +0.0 -0.4 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. +0.3 -0.2 +0.1 +0.3
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 +0.3 -0.1 +0.3
complex community Community=arabino-guar; Passage=4 N.D. -0.0 +0.1 +0.3 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.6 +0.1 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. +0.3 +0.2 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.4 +0.1 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.2 +0.3 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.5 +0.1 -0.1 +0.2
complex community Community=Locust bean gum; Passage=1 N.D. +0.2 -0.0 +0.4 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.5 +0.3 +0.1 +0.1
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