Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF12 and GFF13 are separated by 35 nucleotidesGFF13 and GFF14 overlap by 32 nucleotidesGFF14 and GFF15 are separated by 152 nucleotidesGFF15 and GFF16 are separated by 3 nucleotides GFF12 - Two-component system sensor histidine kinase, at 12,734 to 14,143 GFF12 GFF13 - BUG/TctC family periplasmic protein, at 14,179 to 14,289 GFF13 GFF14 - N-acetyltransferase ElaA, at 14,258 to 14,656 GFF14 GFF15 - no description, at 14,809 to 15,117 GFF15 GFF16 - Cellulose synthase (UDP-forming) (EC 2.4.1.12) / Efflux transport system, outer membrane factor (OMF) lipoprotein, at 15,121 to 18,555 GFF16
Group Condition GFF12 GFF13 GFF14 GFF15 GFF16
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 N.D. -0.2 -1.9 -0.1
complex community Community=guar; Passage=4 -3.0 N.D. -0.2 +1.1 -0.2
complex community Community=Kojac gum; Passage=4 -1.5 N.D. -0.3 -0.4 +0.0
complex community Community=Locust bean gum; Passage=4 -4.5 N.D. +0.5 +1.8 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.5 N.D. -0.3 -1.5 +0.0
complex community Community=guar; Passage=4 +0.4 N.D. +0.4 -2.9 +0.0
complex community Community=arabino-guar; Passage=4 -1.3 N.D. -0.6 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 N.D. -0.5 -0.7 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.8 N.D. +0.5 -1.4 +0.1
complex community Community=Locust bean gum; Passage=4 -1.4 N.D. -0.4 +0.1 +0.1
complex community Community=guar; Passage=4 -0.7 N.D. -0.7 +0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.1 N.D. -0.0 -1.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -1.6 N.D. +0.2 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 N.D. -0.3 -0.5 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 N.D. -0.1 -0.8 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 N.D. +0.1 -1.0 +0.0
phage phage_bap4 -0.5 N.D. -0.3 -0.5 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 N.D. -0.0 -1.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.6 N.D. -0.5 +0.1 -0.0
complex community Community=arabino-guar; Passage=4 -0.9 N.D. -0.0 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.3 N.D. -0.6 -0.6 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.8 N.D. +0.2 -0.3 +0.1
phage phage_bap4 +0.4 N.D. -0.2 -0.9 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 N.D. +0.2 -0.4 +0.1
complex community Community=guar; Passage=4 -1.0 N.D. +0.2 -0.2 +0.3
complex community Community=Locust bean gum; Passage=4 -0.9 N.D. +0.3 +0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.6 N.D. +0.5 +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 N.D. +0.1 +0.9 -0.1
no phage control no phage control +0.4 N.D. -0.2 +0.7 +0.1
complex community Community=Locust bean gum; Passage=4 +0.8 N.D. -0.4 +1.1 +0.1
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