Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07050	PS417_07055	PS417_07060	PS417_07065	PS417_07070
carbon source	L-Valine (C)	-0.0	+0.1	-0.7	+0.6	-1.6
motility	inner cut, LB soft agar motility assay	-0.1	-0.0	-0.5	-0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.1	-0.5	-0.5	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.1	-0.5	-0.3	-0.3
phage	P. simiae OR Antrim MOI 10	-0.1	+0.2	-0.4	-0.1	-0.8
carbon source	L-Valine (C)	+0.1	+0.1	-0.0	-0.1	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	+0.0	-0.4	+0.5	-0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	-0.3	-0.5	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.5	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-0.4	+0.2	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	-0.1	-0.6	+0.3	+0.2
carbon source	octanoate (C)	-0.0	+0.2	+0.3	-0.2	-0.5
soil	soil sample 4; outgrowth in LB	+0.3	-0.1	-0.5	+0.2	+0.2
soil	soil sample 2; outgrowth in LB	+0.0	+0.2	-0.6	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.1	+0.7	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.0	+0.6	-0.2	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.1	+0.5	-0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	-0.4	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.4	-0.4	+0.1
root	root sample 6; outgrowth in LB	+0.4	-0.1	-0.2	+0.7	-0.3
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	-0.1	+0.4	-0.2	+0.5
stress	methylglyoxal 0.032 vol%	+0.3	-0.1	-0.1	+0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.0	+0.2	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	+0.7	+0.3	-0.1
seeds	Growth on radish seeds for 72 hours	+0.2	+0.1	-0.1	+0.0	+1.0
carbon source	D-Xylose (C)	-0.0	-0.0	+0.3	+0.6	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	+0.8	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.0	+0.4	+0.2	+0.8
carbon source	Trisodium citrate (C)	-0.1	-0.0	-0.2	+9.2	+9.0
carbon source	Trisodium citrate (C)	+0.0	+0.1	+0.1	+9.0	+9.0