Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_06985	PS417_06990	PS417_06995	PS417_07000	PS417_07005
phage	JP1 MOI 1	+0.6	-0.5	-0.7	-2.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.1	-0.4	-0.7	-0.5
seeds	Growth on radish seeds for 72 hours	+0.4	+0.2	-0.3	-1.4	-0.4
solid stress	Fraxetin 3 mM; solid stress	+0.3	-0.0	+0.2	-1.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.2	+0.0	-1.1	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.1	-0.5	-0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.3	+0.0	-0.9	-0.4
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	-0.3	-0.2	+0.1	-0.9	+0.3
phage	P. simiae ORA MOI 10	+0.2	-0.2	+0.2	-1.3	+0.2
phage	P. simiae Grant Run MOI 0.1	+0.6	-0.2	-0.5	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.1	-0.3	+0.1	-0.8
phage	Wcs_0.1	+0.1	-0.2	-0.1	-0.9	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	+0.1	+0.5	-0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.7	-0.1	+0.5	-0.9	-0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.1	+0.2	+0.4	-0.9	+0.2
carbon source	D-Alanine (C)	+0.6	+0.1	+0.1	-0.7	-0.2
stress	Gentamicin 0.008 mg/ml	-0.0	+0.2	-0.6	-0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	+0.5	-0.8	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.1	-0.0	+1.0	-0.5
phage	P. simiae OR Antrim MOI 1	+0.7	+0.1	+0.3	-0.2	-0.6
stress	methylglyoxal 0.032 vol%	+0.7	+0.2	-0.9	+0.1	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.7	+0.3	-0.1	-0.5	+0.4
phage	JP1 MOI 1	+0.7	+0.0	-0.3	+0.9	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	+0.1	+0.7	+0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.1	+1.4	-0.2	+0.1
phage	JP1 MOI 0.1	+0.3	-0.2	+0.4	-0.0	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.5	-0.3	+0.6	+0.8
phage	JP1 MOI 10	+0.1	+0.2	-0.3	+1.5	-0.1
phage	P. simiae OR1 MOI 0.1	+0.5	+0.2	+0.6	+0.2	+0.2
soil	soil sample 7; outgrowth in LB	+0.6	+0.0	+0.1	+0.7	+0.5