Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06940 and PS417_06945 are separated by 0 nucleotidesPS417_06945 and PS417_06950 are separated by 68 nucleotidesPS417_06950 and PS417_06955 are separated by 204 nucleotidesPS417_06955 and PS417_06960 are separated by 55 nucleotides PS417_06940: PS417_06940 - MFS transporter permease, at 1,535,867 to 1,537,198 _06940 PS417_06945: PS417_06945 - membrane protein, at 1,537,199 to 1,537,687 _06945 PS417_06950: PS417_06950 - LysR family transcriptional regulator, at 1,537,756 to 1,538,682 _06950 PS417_06955: PS417_06955 - membrane protein, at 1,538,887 to 1,539,414 _06955 PS417_06960: PS417_06960 - membrane protein, at 1,539,470 to 1,539,895 _06960
Group Condition PS417_06940 PS417_06945 PS417_06950 PS417_06955 PS417_06960
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -3.9 +0.0 -0.7 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -2.7 -0.4 -0.4 -0.2
soil soil sample 4; outgrowth in LB -0.1 -2.2 -0.2 -0.6 -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.1 -3.5 -0.1 +0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -2.4 +0.1 -0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -1.3 -0.6 -0.6 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -2.9 +0.2 -0.1 +0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 -3.5 +0.0 +0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 -1.5 -0.4 -0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -2.4 +0.5 -0.5 -0.2
motility outer cut, LB soft agar motility assay +0.0 -1.8 -0.2 -0.2 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.1 -1.7 +0.1 -0.6 -0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 -1.5 +0.1 -0.5 -0.2
soil soil sample 8; outgrowth in LB -0.1 -1.6 +0.1 +0.1 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 -0.8 -0.3 -0.7 -0.3
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.1 -1.7 -0.2 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.3 -0.0 -0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.8 +0.4 -0.6 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -1.1 -0.3 -0.7 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -1.5 +0.1 +0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +1.5 -0.1 -0.6 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -1.1 +0.0 -0.5 +0.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 +1.0 -0.1 -1.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +1.9 -0.2 -0.7 -0.3
phage JP1 MOI 10 +0.3 +1.3 -0.4 -0.1 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 +2.1 -0.3 -0.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.4 -0.2 +1.0 +1.1
stress methylglyoxal 0.032 vol% -0.3 +1.4 -0.0 -0.1 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.2 +0.1 -0.2 +0.4
stress Gentamicin 0.008 mg/ml +0.2 +2.2 +0.1 -0.0 -0.2
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