Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06825	PS417_06830	PS417_06835	PS417_06840	PS417_06845
soil	soil sample 5; outgrowth in LB	-0.6	-0.7	-1.3	-0.6	-2.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.9	-0.6	-1.3	+0.0	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.0	+0.3	+0.0	-4.5
phage	P. simiae OR Antrim MOI 1	-1.1	-0.5	-0.6	+0.0	-1.3
stress	Phosphomycin 0.002 mg/ml	-0.8	-0.3	-0.9	-0.2	-0.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.9	-0.0	+0.4	-0.3	-1.9
soil	soil sample 4; outgrowth in LB	+0.2	-0.1	+0.2	-0.8	-1.9
soil	soil sample 2; outgrowth in LB	-0.6	+0.3	-1.1	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	-1.0	-0.3	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.6	-0.6	-0.2	-1.3
phage	JP1 MOI 0.1	+0.7	+0.5	+0.2	-0.2	-2.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.8	+0.7	-0.1	-0.7
root	root sample 6; outgrowth in LB	+0.4	-0.3	-0.9	-0.8	+0.8
soil	soil sample 6; outgrowth in LB	+0.5	-0.4	+0.8	-0.2	-1.3
motility	outer cut, LB soft agar motility assay	-0.9	+0.5	-0.0	-0.6	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	+0.9	+0.5	-1.3
solid stress	Fraxetin 3 mM; solid stress	-0.9	+0.5	-0.8	+0.4	+0.4
no stress control on plate	growth on LB_noSalt plate	+0.4	-0.2	-1.3	+0.1	+0.6
solid stress	Fraxetin 3 mM; solid stress	-0.2	+0.6	+0.2	+0.4	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.2	+0.3	+0.3	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	-0.0	-1.1	+0.2	+0.9
seeds	Growth on radish seeds for 24 hours	-0.6	+0.2	-0.3	+0.2	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.3	+0.5	+0.2	+0.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.1	+2.0	-0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	+0.7	-0.8	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.7	+1.9	+0.2	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+1.0	-0.4	-0.1	-0.1	+1.6
stress	methylglyoxal 0.032 vol%	+0.5	+0.8	+1.0	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	+0.4	+0.4	+0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.4	+2.5	-0.3	+1.6