Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06785	PS417_06790	PS417_06795	PS417_06800	PS417_06805
soil	soil sample 2; outgrowth in LB	+0.0	-0.6	N.D.	-0.2	-0.9
stress	Doxycycline hyclate 0.001 mg/ml	-0.8	-0.4	N.D.	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.6	N.D.	-0.2	-0.3
phage	P. simiae Grant Run MOI 0.1	-0.4	-0.2	N.D.	+0.0	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+0.1	N.D.	-0.0	-0.6
seeds	Growth on radish seeds for 72 hours	-0.8	-0.1	N.D.	+0.1	-0.3
phage	P. simiae OR Antrim MOI 0.1	-0.5	-0.4	N.D.	+0.1	-0.2
soil	soil sample 6; outgrowth in LB	-0.4	-0.5	N.D.	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.0	N.D.	+0.2	-0.0
soil	soil sample 3; outgrowth in LB	+0.2	-0.5	N.D.	+0.0	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.3	N.D.	+0.5	-0.0
soil	soil sample 5; outgrowth in LB	+0.3	-0.5	N.D.	+0.1	-0.3
phage	JP1 MOI 10	-0.7	-0.0	N.D.	+0.2	+0.2
root	root sample 6; outgrowth in LB	+0.4	-0.4	N.D.	+0.2	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.7	N.D.	+0.0	-0.6
phage	P. simiae Grant Run MOI 0.1	-0.4	+0.4	N.D.	-0.2	+0.2
phage	JP1 MOI 1	-1.0	+0.1	N.D.	+0.4	+0.5
soil	soil sample 8; outgrowth in LB	-0.6	+0.5	N.D.	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	N.D.	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.5	N.D.	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.6	N.D.	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.1	N.D.	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.5	N.D.	+0.3	-0.1
phage	JP1 MOI 10	-0.4	+0.1	N.D.	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	N.D.	+0.0	-0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.3	-0.3	N.D.	+0.1	+0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.5	N.D.	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.3	N.D.	+0.4	+0.3
seeds	Growth on radish seeds for 72 hours	+0.3	+0.2	N.D.	+0.6	-0.4
phage	JP1 MOI 0.1	+0.3	+0.6	N.D.	+0.4	-0.1