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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1334 and GFF1335 are separated by 114 nucleotides
GFF1335 and GFF1336 are separated by 142 nucleotides
GFF1336 and GFF1337 are separated by 218 nucleotides
GFF1337 and GFF1338 are separated by 80 nucleotides
GFF1334 - Cocaine esterase (EC 3.1.1.-), at 673,401 to 675,287
GFF1334
GFF1335 - 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type, at 675,402 to 677,045
GFF1335
GFF1336 - ABC transporter, substrate-binding protein RSc1750, at 677,188 to 678,417
GFF1336
GFF1337 - ABC transporter, substrate-binding protein RSc1750, at 678,636 to 679,868
GFF1337
GFF1338 - ABC transporter, permease protein 1 RSc1751, at 679,949 to 680,902
GFF1338
Group
Condition
GFF1334
GFF1335
GFF1336
GFF1337
GFF1338
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
+0.2
-0.2
-1.2
complex community
Community=guar; Passage=4
-0.0
-0.1
-0.2
-0.0
-0.7
complex community
Community=guar; Passage=4
+0.2
-0.2
+0.1
-0.1
-0.8
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.1
-0.1
-0.3
-0.0
complex community
Community=arabino-guar; Passage=4
+0.3
-0.0
+0.0
-0.1
-0.8
complex community
Community=Kojac gum; Passage=4
+0.3
-0.1
-0.1
+0.2
-0.8
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.2
+0.2
-0.3
-0.6
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.3
+0.1
-0.4
-0.0
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.1
-0.3
-0.2
complex community
Community=guar; Passage=4
+0.2
-0.2
+0.2
-0.0
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.2
+0.1
-0.0
-0.2
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.1
+0.1
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.1
+0.3
-0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.4
-0.1
+0.1
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.2
+0.2
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
+0.1
+0.1
-0.3
+0.2
complex community
Community=arabino-guar; Passage=4
+0.5
-0.2
+0.1
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.0
+0.1
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
-0.1
+0.1
-0.1
+0.3
phage
phage_bap4
+0.3
+0.0
-0.1
+0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.1
+0.1
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.1
+0.1
-0.1
+0.5
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.2
+0.1
+0.1
+0.4
phage
phage_bap4
+0.2
+0.0
-0.1
+0.1
+0.3
phage
phage_bap4
+0.1
-0.0
+0.1
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.0
+0.2
-0.0
+0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.0
+0.1
+0.0
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.1
+0.2
-0.1
+0.4
phage
phage_bap4
+0.2
+0.1
+0.0
+0.1
+0.3
complex community
Community=arabino-guar; Passage=4
+0.1
-0.0
+0.2
-0.3
+1.0
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