Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06780 and PS417_06785 are separated by 255 nucleotidesPS417_06785 and PS417_06790 are separated by 29 nucleotidesPS417_06790 and PS417_06795 are separated by 13 nucleotidesPS417_06795 and PS417_06800 are separated by 154 nucleotides PS417_06780: PS417_06780 - TetR family transcriptional regulator, at 1,502,940 to 1,503,572 _06780 PS417_06785: PS417_06785 - NADH:flavin oxidoreductase, at 1,503,828 to 1,504,883 _06785 PS417_06790: PS417_06790 - arabinose transporter permease, at 1,504,913 to 1,506,079 _06790 PS417_06795: PS417_06795 - ArsR family transcriptional regulator, at 1,506,093 to 1,506,419 _06795 PS417_06800: PS417_06800 - ACP phosphodiesterase, at 1,506,574 to 1,507,158 _06800
Group Condition PS417_06780 PS417_06785 PS417_06790 PS417_06795 PS417_06800
rhizosphere rhizosphere sample 1; outgrowth in LB -3.9 +0.1 -0.4 N.D. -0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.7 -0.3 -0.7 N.D. +0.1
soil soil sample 5; outgrowth in LB -3.3 +0.3 -0.5 N.D. +0.1
stress methylglyoxal 0.032 vol% -2.5 +0.3 -0.2 N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -0.2 +0.3 N.D. -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 -0.6 +0.0 N.D. -0.0
soil soil sample 7; outgrowth in LB -1.9 +0.3 -0.3 N.D. -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -1.4 +0.0 -0.6 N.D. +0.2
soil soil sample 3; outgrowth in LB -1.5 +0.2 -0.5 N.D. +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.9 -0.3 +0.2 N.D. +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.9 -0.3 +0.3 N.D. +0.2
soil soil sample 6; outgrowth in LB -1.0 -0.4 -0.5 N.D. +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.1 +0.3 +0.3 N.D. -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -0.7 -0.3 N.D. +0.5
soil soil sample 8; outgrowth in LB -1.1 -0.6 +0.5 N.D. -0.0
phage JP1 MOI 1 -0.6 -1.0 +0.1 N.D. +0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 -0.5 +0.5 N.D. +0.1
liquid stress Fraxetin 2 mM; liquid stress +1.1 -0.3 -0.4 N.D. -0.2
liquid stress Fraxetin 3 mM; liquid stress +1.6 -0.1 -0.4 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.8 +0.2 -0.3 N.D. -0.0
stress Tetracycline 0.001 mg/ml +2.5 -0.3 +0.1 N.D. -0.3
stress Nalidixic 0.015 mg/ml +2.8 -0.1 -0.2 N.D. -0.2
stress R2A with Fusaric 120 ug/mL +3.3 -0.2 +0.2 N.D. -0.2
stress R2A with Fusaric 120 ug/mL +3.2 +0.0 +0.2 N.D. -0.2
stress R2A with Fusaric 120 ug/mL +3.1 +0.1 +0.1 N.D. -0.1
stress R2A with Fusaric 120 ug/mL +3.1 +0.2 +0.0 N.D. -0.1
stress R2A with Fusaric 120 ug/mL +3.1 +0.0 +0.3 N.D. -0.1
stress R2A with Fusaric 120 ug/mL +3.4 -0.2 +0.2 N.D. +0.2
stress Doxycycline hyclate 0.001 mg/ml +5.4 -0.8 -0.4 N.D. -0.3
stress Nalidixic 0.025 mg/ml +5.0 -0.1 -0.1 N.D. -0.2
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