Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00660 and PS417_00665 overlap by 4 nucleotidesPS417_00665 and PS417_00670 are separated by 74 nucleotidesPS417_00670 and PS417_00675 overlap by 4 nucleotidesPS417_00675 and PS417_00680 are separated by 92 nucleotides PS417_00660: PS417_00660 - DSBA oxidoreductase, at 135,246 to 136,304 _00660 PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746 _00665 PS417_00670: PS417_00670 - RNA polymerase sigma factor, at 137,821 to 138,330 _00670 PS417_00675: PS417_00675 - iron dicitrate transport regulator FecR, at 138,327 to 139,277 _00675 PS417_00680: PS417_00680 - TonB-dependent receptor, at 139,370 to 141,823 _00680
Group Condition PS417_00660 PS417_00665 PS417_00670 PS417_00675 PS417_00680
solid stress Fraxetin 3 mM; solid stress -4.5 -5.5 -0.1 -0.7 -0.0
liquid stress Fraxetin 3 mM; liquid stress -4.8 -5.4 +0.4 -0.1 -0.0
liquid stress Fraxetin 3 mM; liquid stress -5.7 -4.7 +0.3 +0.3 +0.1
liquid stress Fraxetin 3 mM; liquid stress -4.8 -5.2 +0.8 -0.1 +0.0
liquid stress Fraxetin 3 mM; liquid stress -4.8 -4.4 +0.1 -0.1 +0.0
liquid stress Fraxetin 3 mM; liquid stress -4.9 -4.4 +0.4 -0.1 +0.1
solid stress Fraxetin 3 mM; solid stress -4.5 -3.9 -0.3 +0.2 +0.0
solid stress Fraxetin 3 mM; solid stress -3.6 -3.4 -0.0 -0.1 -0.0
solid stress Fraxetin 3 mM; solid stress -3.1 -4.0 +0.1 +0.1 -0.0
solid stress Fraxetin 2 mM; solid stress -4.1 -2.8 -0.1 -0.1 +0.1
solid stress Fraxetin 2 mM; solid stress -3.8 -2.9 +0.1 +0.2 -0.1
solid stress Fraxetin 2 mM; solid stress -2.9 -2.8 +0.4 -0.2 +0.0
liquid stress Fraxetin 2 mM; liquid stress -3.2 -2.1 -0.0 -0.0 -0.0
solid stress Fraxetin 2 mM; solid stress -2.4 -2.5 +0.0 -0.1 +0.0
liquid stress Fraxetin 2 mM; liquid stress -2.9 -2.0 +0.1 +0.1 -0.0
liquid stress Fraxetin 2 mM; liquid stress -2.7 -1.7 -0.2 -0.0 -0.1
solid stress Fraxetin 2 mM; solid stress -1.8 -2.3 -0.1 +0.2 -0.1
liquid stress Fraxetin 2 mM; liquid stress -1.6 -2.2 -0.2 +0.2 -0.0
agar plate interaction control Taped volatile agar plate with no fungus -0.7 -0.3 -1.6 -0.7 -0.1
solid stress Fraxetin 1 mM; solid stress -2.3 -1.1 +0.1 +0.1 +0.0
liquid stress Fraxetin 2 mM; liquid stress -0.9 -1.6 +0.1 +0.1 -0.1
liquid stress Fraxetin 1 mM; liquid stress -1.7 -0.9 +0.3 -0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 +0.0 -0.4 -0.1 +0.3
liquid stress Fraxetin 1 mM; liquid stress -1.1 -1.1 +0.4 -0.3 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.8 +0.2 +0.4 -0.6 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.3 -1.2 +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.2 +1.4 +0.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 +0.2 +1.1 +0.7 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -0.7 +1.3 -0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +0.4 +1.1 -1.0 +0.0
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