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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1325 and GFF1326 are separated by 112 nucleotides
GFF1326 and GFF1327 are separated by 353 nucleotides
GFF1327 and GFF1328 are separated by 56 nucleotides
GFF1328 and GFF1329 overlap by 10 nucleotides
GFF1325 - Aspartate racemase (EC 5.1.1.13), at 33,790 to 34,497
GFF1325
GFF1326 - Arabinose-proton symporter, at 34,610 to 36,028
GFF1326
GFF1327 - 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125), at 36,382 to 37,143
GFF1327
GFF1328 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17), at 37,200 to 38,036
GFF1328
GFF1329 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17), at 38,027 to 38,197
GFF1329
Group
Condition
GFF1325
GFF1326
GFF1327
GFF1328
GFF1329
phage
LB_plus_SM_buffer with P22_phage 15 MOI
+0.0
-0.4
-0.2
-0.0
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.1
-0.2
-0.3
+0.2
N.D.
micoeukaryotes
C.elegans, mixed culture-1
+0.1
-0.1
-0.2
-0.1
N.D.
phage
6F2_phage 15 MOI
-0.4
-0.1
+0.1
+0.0
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.0
+0.2
-0.4
-0.2
N.D.
phage
6F2_phage 15 MOI
-0.3
-0.1
+0.2
-0.1
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.1
-0.1
-0.2
+0.1
N.D.
phage
LB_plus_SM_buffer with Ffm_phage 1.875 MOI
+0.1
-0.2
-0.1
-0.1
N.D.
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.2
+0.6
-0.4
-0.2
N.D.
phage
phi19h1_phage 15 MOI
-0.2
-0.1
+0.2
+0.0
N.D.
phage
LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
+0.1
+0.1
-0.2
-0.1
N.D.
nophagecontrol
No phage control
-0.1
-0.2
+0.1
+0.1
N.D.
phage
6H2_phage 10 MOI; agar plate assay
-0.1
-0.2
+0.2
+0.0
N.D.
phage
6F2_phage 15 MOI
-0.3
+0.2
+0.2
-0.1
N.D.
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
-0.1
+0.3
-0.1
-0.1
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.2
-0.2
-0.1
+0.1
N.D.
phage
LB_plus_SM_buffer with Ffm_phage 15 MOI
+0.2
+0.1
-0.1
-0.0
N.D.
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
+0.3
-0.1
-0.3
+0.2
N.D.
phage
LB_plus_SM_buffer with S16_phage 15 MOI
+0.0
+0.5
-0.3
-0.1
N.D.
nophagecontrol
No phage control
+0.2
-0.2
+0.1
+0.0
N.D.
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+0.0
+0.3
-0.1
-0.1
N.D.
phage
LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
+0.1
-0.2
+0.1
+0.2
N.D.
phage
phi19h1_phage 15 MOI
-0.2
+0.1
+0.2
+0.2
N.D.
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
+0.1
+0.2
+0.1
-0.1
N.D.
phage
LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
+0.2
-0.1
-0.0
+0.1
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
+0.4
+0.2
-0.2
-0.1
N.D.
phage
Ffm_phage 10 MOI; agar plate assay
-0.0
-0.2
+0.3
+0.2
N.D.
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.0
-0.1
-0.1
+0.5
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
+0.1
+0.2
+0.1
+0.3
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+0.1
+0.5
+0.2
+0.1
N.D.
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