Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06700	PS417_06705	PS417_06710	PS417_06715	PS417_06720
carbon source	L-Tryptophan (C)	-3.8	-3.2	-4.6	-0.1	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-2.3	-2.5	+0.1	-0.4
phage	Wcs_1	-0.2	-1.0	-2.1	-0.5	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.4	-0.7	-3.1	-0.0	+0.1
nitrogen source	Adenine (N)	-1.1	-0.6	-0.5	-0.6	-0.2
root	root sample 6; outgrowth in LB	-0.6	-0.0	-1.4	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.6	-0.7	-0.2	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	-1.0	-1.0	+0.1	+0.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	+0.1	-2.2	+0.1	+0.0
seeds	Growth on radish seeds for 72 hours	-0.9	-0.1	-0.8	-0.4	+0.1
carbon source	L-Valine (C)	-0.0	-0.1	-2.4	+0.1	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	+0.3	-1.4	+0.1	-0.2
phage	P. simiae OR1 MOI 0.1	-0.4	-0.2	+0.3	-0.8	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	-0.9	-0.3	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.4	-0.8	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.6	+0.8	-0.1	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	+0.4	-2.1	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.8	+0.3	-0.3	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.7	-2.1	+0.5	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	+0.1	+0.7	-0.4	+0.1
carbon source	D-Glucosamine Hydrochloride (C)	-0.4	-0.2	-0.6	+0.3	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.7	-0.5	-0.4	-0.3	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.3	+1.1	+0.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.9	+1.2	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.2	+1.4	+0.3	+0.2
phage	P. simiae OR Antrim MOI 0.1	+0.6	+0.3	+1.3	-0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.4	-0.2	-0.4	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.9	-0.2	+0.9	+0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.5	+1.5	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.1	+1.4	+0.3	+0.4