Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06685	PS417_06690	PS417_06695	PS417_06700	PS417_06705
carbon source	L-Tryptophan (C)	-0.3	-3.4	+0.2	-3.8	-3.2
nitrogen source	Adenine (N)	-4.7	-0.4	-0.2	-1.1	-0.6
phage	Wcs_1	-2.9	-0.5	-0.8	-0.2	-1.0
carbon source	2-Deoxy-D-Ribose (C)	-4.4	-0.1	-0.3	-0.3	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-3.2	-0.3	-0.6	-0.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-3.9	-0.1	+0.1	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.2	+0.2	-1.0	-2.3
phage	P. simiae OR1 MOI 0.1	-3.2	-0.3	-0.2	-0.4	-0.2
seeds	Growth on radish seeds for 72 hours	-2.6	+0.0	-0.6	-0.9	-0.1
solid stress	Fraxetin 2 mM; solid stress	-4.0	+0.0	+0.1	-0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.4	+0.1	+0.4	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	-0.1	+0.3	-1.3	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-2.7	-0.1	-0.2	-0.1	+0.1
stress	Doxycycline hyclate 0.001 mg/ml	-1.6	-0.1	-0.3	-0.3	-0.7
carbon source	Carbon source D-Mannitol 2.5 mM	-1.8	-0.0	-0.2	-0.4	-0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.3	-0.2	-0.4	-0.4	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-4.4	+0.3	+0.1	+1.7	-0.5
solid stress	80% Methanol 0.5 mM; solid stress	-3.0	-0.0	+0.1	+0.1	+0.4
root	root sample 6; outgrowth in LB	-1.2	-0.8	+0.4	-0.6	-0.0
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1	-1.8	+0.1	+0.3	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.4	-0.3	-0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	+0.5	+0.0	+0.7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.8	+0.3	+0.1	-0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.2	+0.5	+0.7	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.3	-0.3	-0.0	+0.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.2	-0.3	+2.4	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+1.9	+0.2	-0.3	+0.5	+0.4
phage	P. simiae OR Antrim MOI 0.1	+2.0	-0.3	+0.2	+0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.7	+0.4	+0.4	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.8	-0.1	-0.0	+1.0	-0.4