Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06675	PS417_06680	PS417_06685	PS417_06690	PS417_06695
phage	Wcs_1	-1.4	-2.0	-2.9	-0.5	-0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.9	-2.0	-3.2	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	-4.5	-0.9	+0.2	+0.1
solid stress	Fraxetin 2 mM; solid stress	-0.4	-2.5	-4.0	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-2.0	-3.9	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.8	-4.4	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	-3.2	-1.0	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-3.8	-1.2	+0.0	+0.0
solid stress	80% Methanol 0.5 mM; solid stress	+0.1	-2.2	-3.0	-0.0	+0.1
carbon source	2-Deoxy-D-Ribose (C)	+0.2	-0.3	-4.4	-0.1	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.2	-2.9	-1.3	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-4.0	-0.5	-0.2	+0.2
liquid stress	Scopoletin 3 mM; liquid stress	-0.6	-3.1	-1.2	+0.0	+0.1
solid stress	Scopoletin 3 mM; solid stress	+0.3	-3.7	-1.2	-0.0	-0.1
solid stress	Scopoletin 3 mM; solid stress	+0.2	-3.6	-0.7	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-3.2	-1.7	+0.5	+0.0
solid stress	Fraxetin 1 mM; solid stress	+0.2	-2.8	-1.8	-0.1	+0.2
solid stress	Fraxetin 2 mM; solid stress	+0.5	-3.2	-1.3	-0.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	+0.3	-4.4	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.4	-2.6	+0.7	+0.3	-0.0
seeds	Growth on radish seeds for 72 hours	+1.2	-1.0	-2.6	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-3.9	+1.0	-0.0	+0.3
nitrogen source	Adenine (N)	-0.5	+4.0	-4.7	-0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-2.3	+1.6	+0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-3.1	+1.7	+0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-2.6	+1.7	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.7	-0.7	+2.8	-0.1	-0.0
stress	Phosphomycin 0.002 mg/ml	+0.4	+4.4	-0.4	+0.0	+0.1
stress	Phosphomycin 0.003 mg/ml	+0.3	+4.7	+0.3	-0.0	-0.1
stress	Phosphomycin 0.001 mg/ml	-0.2	+5.0	+0.3	+0.1	+0.2