Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06640 and PS417_06645 are separated by 180 nucleotidesPS417_06645 and PS417_06650 are separated by 219 nucleotidesPS417_06650 and PS417_06655 overlap by 4 nucleotidesPS417_06655 and PS417_06660 overlap by 4 nucleotides PS417_06640: PS417_06640 - MFS transporter, at 1,471,198 to 1,472,544 _06640 PS417_06645: PS417_06645 - RNA polymerase-associated protein RapA, at 1,472,725 to 1,475,571 _06645 PS417_06650: PS417_06650 - aspartate-semialdehyde dehydrogenase, at 1,475,791 to 1,476,132 _06650 PS417_06655: PS417_06655 - class V aminotransferase, at 1,476,129 to 1,477,310 _06655 PS417_06660: PS417_06660 - endoribonuclease, at 1,477,307 to 1,477,777 _06660
Group Condition PS417_06640 PS417_06645 PS417_06650 PS417_06655 PS417_06660
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -2.3 N.D. -0.0 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -2.4 N.D. -0.1 -0.0
carbon source D-Gluconic Acid (C) -0.1 -2.3 N.D. -0.2 +0.0
carbon source D-Glucose (C) -0.1 -2.2 N.D. -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -2.5 N.D. -0.0 -0.0
nitrogen source Ammonium chloride (N) -0.1 -2.1 N.D. -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 -1.3 N.D. -0.1 -0.5
carbon source D-Glucose (C) +0.0 -2.2 N.D. +0.0 -0.1
carbon source D-Gluconic Acid (C) -0.1 -2.1 N.D. +0.0 -0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -1.7 N.D. -0.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -2.2 N.D. -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -2.1 N.D. +0.2 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.0 -0.5 N.D. -0.5 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -1.9 N.D. +0.3 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -2.7 N.D. +0.1 +0.6
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.1 N.D. -0.9 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.5 N.D. -0.2 -0.3
nitrogen source nitrate (N) +0.0 -1.8 N.D. -0.1 +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.0 -1.6 N.D. +0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 -1.6 N.D. +0.2 -0.1
carbon source octanoate (C) +0.0 -1.3 N.D. -0.4 +0.2
stress Gentamicin 0.008 mg/ml -0.2 -2.2 N.D. +0.3 +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.6 N.D. -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -1.3 N.D. +0.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -1.4 N.D. +0.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.8 N.D. +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.6 N.D. -0.1 +0.3
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x -0.3 -1.2 N.D. +0.3 -0.1
phage moi 100 Time6-phageFRS +0.1 -1.4 N.D. +0.3 -0.2
stress Neomycin 0.04 mg/ml +0.0 -1.2 N.D. +0.2 +0.8
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