Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06635	PS417_06640	PS417_06645	PS417_06650	PS417_06655
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-3.2	+0.0	-0.8	N.D.	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.2	-0.0	-0.8	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.1	-2.3	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	-2.4	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.1	-2.1	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.0	-1.7	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-2.7	N.D.	+0.1
carbon source	D-Gluconic Acid (C)	-0.6	-0.1	-2.1	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.7	-0.1	-1.0	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-3.0	+0.2	+0.6	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.2	-1.6	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	-2.5	N.D.	-0.0
carbon source	L-Valine (C)	-1.3	+0.3	-0.8	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.1	-2.2	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.4	-1.9	N.D.	+0.3
carbon source	D-Gluconic Acid (C)	+0.9	-0.1	-2.3	N.D.	-0.2
stress	Gentamicin 0.008 mg/ml	+0.7	-0.2	-2.2	N.D.	+0.3
phage	P. simiae ORA MOI 1	-2.1	+0.1	+0.3	N.D.	+0.4
carbon source	D-Glucose (C)	+1.2	-0.1	-2.2	N.D.	-0.2
phage	P. simiae ORA MOI 10	-2.3	-0.2	+0.7	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.2	-1.5	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.1	-1.8	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	+0.1	-1.6	N.D.	+0.2
root	root sample 6; outgrowth in LB	+2.3	-0.2	-0.8	N.D.	-0.1
soil	soil sample 3; outgrowth in LB	+3.1	-0.3	-0.4	N.D.	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+3.2	-0.1	-0.5	N.D.	+0.0
soil	soil sample 8; outgrowth in LB	+3.0	-0.2	+0.3	N.D.	-0.2
phage	P. simiae Grant Run MOI 0.1	+1.7	+0.1	+0.8	N.D.	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+3.5	-0.1	-0.2	N.D.	-0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	+4.3	-0.0	-0.5	N.D.	-0.5