Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1305 and GFF1306 are separated by 38 nucleotidesGFF1306 and GFF1307 are separated by 106 nucleotidesGFF1307 and GFF1308 are separated by 6 nucleotidesGFF1308 and GFF1309 are separated by 4 nucleotides GFF1305 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 635,786 to 636,841 GFF1305 GFF1306 - no description, at 636,880 to 637,005 GFF1306 GFF1307 - Homoserine dehydrogenase (EC 1.1.1.3), at 637,112 to 638,476 GFF1307 GFF1308 - hypothetical protein, at 638,483 to 638,881 GFF1308 GFF1309 - Phosphoglucomutase (EC 5.4.2.2), at 638,886 to 640,541 GFF1309
Group Condition GFF1305 GFF1306 GFF1307 GFF1308 GFF1309
complex community Community=guar; Passage=4 -2.6 +0.0 -0.2 N.D. +0.1
complex community Community=guar; Passage=4 +0.2 -1.9 -0.5 N.D. +0.1
complex community Community=arabino-guar; Passage=4 -0.7 -1.4 +0.0 N.D. +0.4
complex community Community=Locust bean gum; Passage=4 -0.6 -1.4 -0.1 N.D. +0.5
complex community Community=Locust bean gum; Passage=4 -0.9 -0.1 -0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -1.1 -0.2 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 -0.9 +0.1 N.D. +0.0
phage phage_bap4 -0.8 -0.1 -0.3 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.6 -0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 +0.1 -1.2 +0.4 N.D. -0.2
complex community Community=arabino-guar; Passage=4 -0.9 +0.1 +0.0 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.9 -0.1 N.D. +0.1
phage phage_bap4 -0.5 -0.3 -0.1 N.D. -0.0
phage phage_bap4 +0.1 -0.6 -0.1 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.0 -0.5 -0.2 N.D. +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 -0.3 +0.1 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.6 +0.1 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.4 -0.4 -0.0 N.D. +0.1
no phage control no phage control -0.2 +0.5 -0.1 N.D. -0.1
complex community Community=guar; Passage=4 -0.8 +1.0 -0.3 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.5 -0.2 -0.1 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.4 +0.2 N.D. +0.0
complex community Community=Kojac gum; Passage=4 -1.1 +1.0 +0.3 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus +0.4 +0.3 -0.1 N.D. -0.0
phage phage_bap4 -0.1 +1.0 -0.1 N.D. -0.1
phage phage_bap4 +0.2 +0.6 +0.0 N.D. -0.0
no phage control no phage control +0.2 +0.5 -0.0 N.D. +0.2
complex community Community=guar; Passage=4 +0.5 +0.5 -0.3 N.D. +0.2
complex community Community=Locust bean gum; Passage=4 +0.7 +0.3 -0.0 N.D. +0.0
complex community Community=arabino-guar; Passage=4 +1.0 -0.2 +0.3 N.D. +0.2
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