Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06620	PS417_06625	PS417_06630	PS417_06635	PS417_06640
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.3	-0.5	-0.3	-0.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.0	+0.2	+0.2	-3.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0	-0.2	-0.1	-1.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	+0.2	-0.3	-3.0	+0.2
phage	P. simiae ORA MOI 10	-0.4	-0.0	+0.1	-2.3	-0.2
liquid stress	Scopoletin 3 mM; liquid stress	-1.9	+0.1	-0.1	-0.7	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	-0.1	-0.2	-2.3	+0.0
phage	P. simiae ORA MOI 1	-0.4	-0.0	-0.0	-2.1	+0.1
phage	P. simiae ORA MOI 0.1	-2.0	-0.0	-0.2	-0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.3	-0.0	-1.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.1	+0.0	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.3	+0.1	-1.5	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.3	-0.2	-2.2	-0.0
phage	Wcs_1	-1.6	+0.1	-0.1	+0.8	-0.5
soil	soil sample 7; outgrowth in LB	-0.3	+0.2	+0.5	-1.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.4	+0.1	+0.1	+0.7	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.2	+0.3	+0.7	-0.1
phage	JP1 MOI 0.1	-1.2	+0.2	-0.3	+1.0	-0.1
soil	soil sample 2; outgrowth in LB	-1.2	+0.1	-0.1	+1.1	+0.1
phage	P. simiae OR Antrim MOI 1	+0.9	-0.1	+0.3	-1.0	+0.2
soil	soil sample 5; outgrowth in LB	-1.1	-0.1	+0.0	+1.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	+0.0	+0.1	-0.9	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.2	-0.0	-0.2	+0.9	-0.0
root	root sample 6; outgrowth in LB	+0.3	-0.0	-0.0	+2.3	-0.2
phage	P. simiae Grant Run MOI 0.1	+0.7	-0.0	-0.0	+1.7	+0.1
soil	soil sample 8; outgrowth in LB	-0.9	+0.3	+0.4	+3.0	-0.2
soil	soil sample 3; outgrowth in LB	+0.5	-0.1	+0.1	+3.1	-0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	+0.1	+0.2	+3.2	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	+0.0	+0.1	+3.5	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	+0.1	+0.1	+4.3	-0.0