Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06590 and PS417_06595 are separated by 260 nucleotidesPS417_06595 and PS417_06600 are separated by 1 nucleotidesPS417_06600 and PS417_06605 overlap by 4 nucleotidesPS417_06605 and PS417_06610 overlap by 4 nucleotides PS417_06590: PS417_06590 - membrane protein, at 1,459,286 to 1,459,582 _06590 PS417_06595: PS417_06595 - ABC transporter ATP-binding protein, at 1,459,843 to 1,460,544 _06595 PS417_06600: PS417_06600 - leucine/isoleucine/valine transporter ATP-binding subunit, at 1,460,546 to 1,461,313 _06600 PS417_06605: PS417_06605 - leucine/isoleucine/valine transporter permease subunit, at 1,461,310 to 1,462,563 _06605 PS417_06610: PS417_06610 - branched-chain amino acid transporter permease subunit LivH, at 1,462,560 to 1,463,483 _06610
Group Condition PS417_06590 PS417_06595 PS417_06600 PS417_06605 PS417_06610
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -5.2 -0.2 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -3.3 -1.6 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -2.4 -2.2 N.D.
soil soil sample 7; outgrowth in LB N.D. N.D. -4.3 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -4.7 +0.4 N.D.
soil soil sample 5; outgrowth in LB N.D. N.D. -4.0 -0.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -2.5 -1.2 N.D.
soil soil sample 3; outgrowth in LB N.D. N.D. -1.9 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.9 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.3 -1.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -3.2 +0.2 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.5 -0.3 N.D.
soil soil sample 4; outgrowth in LB N.D. N.D. -2.1 -0.7 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -2.5 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -2.3 -0.4 N.D.
stress A22 0.16 mg/ml N.D. N.D. -2.4 -0.2 N.D.
liquid stress Scopoletin 2 mM; liquid stress N.D. N.D. -2.4 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -2.1 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.1 -0.2 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -2.2 -0.1 N.D.
carbon source Carbon source D-Mannitol 10 mM N.D. N.D. -2.2 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -2.3 +0.0 N.D.
carbon source L-Leucine (C) N.D. N.D. -1.0 -1.1 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. -1.4 -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.9 -0.2 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -2.2 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.1 -0.9 N.D.
motility inner cut, LB soft agar motility assay N.D. N.D. -2.0 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.8 +1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.3 +0.8 N.D.
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