Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06570	PS417_06575	PS417_06580	PS417_06585	PS417_06590
phage	P. simiae ORA MOI 10	-0.1	-0.4	-0.7	-0.1	N.D.
phage	P. simiae Grant Run MOI 10	-0.3	-0.4	-0.1	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.0	-0.4	-0.4	N.D.
supernatant control	Vogels_fungal_media 0.1X	-0.3	-0.5	+0.2	-0.4	N.D.
solid stress	Fraxetin 0.5 mM; solid stress	+0.2	-0.4	-0.2	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.2	-0.8	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.3	-0.5	-0.2	N.D.
soil	soil sample 4; outgrowth in LB	+0.2	-0.3	-0.4	-0.2	N.D.
phage	P. simiae ORA MOI 0.1	+0.3	-0.2	-0.5	-0.1	N.D.
stress	methylglyoxal 0.032 vol%	+0.2	-0.0	-0.9	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.9	+0.2	N.D.
phage	P. simiae OR Antrim MOI 10	-0.2	+0.2	+0.2	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.4	+0.0	-0.4	N.D.
seeds	Growth on radish seeds for 72 hours	-0.5	+0.3	-0.2	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.2	-0.1	-0.7	N.D.
phage	P. simiae Grant Run MOI 0.1	+0.5	-0.3	-0.3	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	-0.2	-0.3	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	+0.6	-0.2	-0.2	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.2	+0.5	+0.2	-0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	+0.7	-0.0	-0.0	N.D.
phage	Wcs_1	-0.0	+0.5	-0.4	+0.3	N.D.
phage	P. simiae OR Antrim MOI 10	+0.2	-0.4	+0.5	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.0	+0.8	-0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.6	+0.0	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.9	-0.1	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+1.2	-0.2	-0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.7	-0.2	+0.2	N.D.
carbon source	L-Valine (C)	-0.0	+0.8	-0.0	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.6	-0.1	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	+0.5	+0.6	+0.1	N.D.