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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1283 and GFF1284 are separated by 134 nucleotides
GFF1284 and GFF1285 are separated by 114 nucleotides
GFF1285 and GFF1286 are separated by 21 nucleotides
GFF1286 and GFF1287 overlap by 4 nucleotides
GFF1283 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 611,247 to 611,894
GFF1283
GFF1284 - Transcriptional regulator, LysR family, at 612,029 to 612,943
GFF1284
GFF1285 - Alkyl hydroperoxide reductase subunit C-like protein, at 613,058 to 613,699
GFF1285
GFF1286 - FIG00932541: hypothetical protein, at 613,721 to 614,296
GFF1286
GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309
GFF1287
Group
Condition
GFF1283
GFF1284
GFF1285
GFF1286
GFF1287
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.0
-0.2
-0.4
-1.0
complex community
Community=arabino-guar; Passage=4
-0.1
-0.4
-0.1
-0.8
-0.6
complex community
Community=Kojac gum; Passage=4
-0.0
+0.2
-0.3
-0.8
-1.0
complex community
Community=guar; Passage=4
+0.0
-0.0
-0.3
-0.8
-0.8
complex community
Community=guar; Passage=4
-0.1
-0.0
-0.3
-0.7
-0.6
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.4
-0.1
+0.2
-1.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.4
-0.0
-0.5
-0.1
-0.0
complex community
Community=guar; Passage=4
-0.0
-0.0
-0.1
-0.3
-0.6
complex community
Community=arabino-guar; Passage=4
+0.1
+0.6
-0.6
-0.5
-0.5
complex community
Community=guar; Passage=4
-0.2
+0.4
-0.0
-0.3
-0.5
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.1
-0.1
-0.3
-0.4
complex community
Community=arabino-guar; Passage=4
-0.0
-0.0
+0.3
-0.3
-0.6
complex community
Community=arabino-guar; Passage=4
+0.2
+0.4
-0.2
+0.1
-0.7
phage
phage_bap4
+0.0
-0.1
-0.3
+0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.1
-0.2
-0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.0
-0.2
-0.1
+0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.3
-0.1
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.3
-0.2
-0.2
+0.2
no phage control
no phage control
-0.0
-0.2
-0.2
+0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.2
+0.1
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.3
-0.3
+0.0
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.5
-0.3
+0.4
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.4
-0.2
-0.0
+0.3
complex community
Community=Kojac gum; Passage=1
-0.0
-0.2
+0.1
+0.2
+0.2
phage
phage_bap4
+0.1
-0.2
+0.0
+0.3
+0.3
phage
phage_bap4
-0.1
-0.1
+0.0
+0.5
+0.1
phage
phage_bap4
+0.2
-0.1
+0.2
+0.1
+0.2
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.0
+0.3
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.3
-0.1
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.2
+0.0
+0.6
+0.2
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