Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06485	PS417_06490	PS417_06495	PS417_06500	PS417_06505
liquid stress	Scopoletin 3 mM; liquid stress	-0.1	-0.1	N.D.	-2.6	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	+0.4	N.D.	-3.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.6	N.D.	-1.6	-0.1
root	root sample 6; outgrowth in LB	+0.1	-0.5	N.D.	-1.7	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.5	N.D.	-2.3	-0.1
carbon source	L-Valine (C)	-0.0	+0.1	N.D.	-2.1	+0.2
soil	soil sample 4; outgrowth in LB	+0.1	+0.1	N.D.	-2.6	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.5	N.D.	-1.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.4	N.D.	-1.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.0	N.D.	-0.9	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.2	N.D.	-2.1	+0.8
motility	inner cut, LB soft agar motility assay	+0.2	+0.5	N.D.	-1.6	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-1.4	N.D.	+1.0	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+0.6	N.D.	-1.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.3	N.D.	+0.8	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.4	+0.6	N.D.	-1.5	-0.0
seeds	Growth on radish seeds for 72 hours	+0.7	-1.2	N.D.	-0.1	+0.4
phage	P. simiae OR1 MOI 0.1	-0.3	+0.9	N.D.	-1.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.3	N.D.	+1.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.2	N.D.	+1.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.3	N.D.	+1.2	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.2	N.D.	-1.0	+0.7
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.2	+0.3	N.D.	-1.1	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.3	N.D.	+1.5	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	-0.9	N.D.	+0.7	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.4	N.D.	+1.4	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.3	N.D.	+1.6	+0.8
soil	soil sample 2; outgrowth in LB	-0.1	+0.5	N.D.	+1.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.5	N.D.	+1.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.4	N.D.	+1.5	+0.1