Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06475	PS417_06480	PS417_06485	PS417_06490	PS417_06495
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.6	-0.5	-0.9	N.D.
phage	P. simiae ORA MOI 0.1	N.D.	-0.6	-0.2	-1.3	N.D.
motility	inner cut, LB soft agar motility assay	N.D.	-1.3	+0.3	-0.8	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.1	-0.5	-1.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.1	-1.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.0	-0.2	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.7	-0.7	N.D.
root	root sample 6; outgrowth in LB	N.D.	-1.1	+0.1	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-0.0	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.7	-0.7	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.2	-1.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.3	+0.2	-0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	+0.3	-1.0	N.D.
seeds	Growth on radish seeds for 72 hours	N.D.	-0.3	+0.7	-1.2	N.D.
soil	soil sample 5; outgrowth in LB	N.D.	-1.0	-0.1	+0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	+0.3	+0.0	-0.9	N.D.
seeds	Growth on radish seeds for 72 hours	N.D.	-0.1	+0.4	-0.8	N.D.
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	+0.3	+0.3	-0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.1	+0.5	-0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.5	+0.8	-0.9	N.D.
phage	Wcs_1	N.D.	-0.4	+0.0	+0.8	N.D.
phage	P. simiae OR Antrim MOI 10	N.D.	+0.6	-0.5	+0.3	N.D.
soil	soil sample 6; outgrowth in LB	N.D.	-0.3	+0.5	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.8	+0.4	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.5	+0.8	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.7	+0.3	-0.2	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.7	+0.3	-0.2	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.4	-0.1	+0.9	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.7	+0.4	+0.3	N.D.
stress	methylglyoxal 0.032 vol%	N.D.	+0.6	+0.2	+0.6	N.D.